Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   AB684_RS13585 Genome accession   NZ_CP014781
Coordinates   2629286..2629579 (-) Length   97 a.a.
NCBI ID   WP_003183466.1    Uniprot ID   -
Organism   Bacillus licheniformis strain HRBL-15TDI7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2624286..2634579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB684_RS13540 (AB684_13540) tasA 2624668..2625462 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  AB684_RS13545 (AB684_13545) sipW 2625536..2626120 (-) 585 WP_003183449.1 signal peptidase I SipW -
  AB684_RS13550 (AB684_13550) tapA 2626117..2626845 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  AB684_RS13555 (AB684_13555) - 2627122..2627442 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  AB684_RS13560 (AB684_13560) - 2627466..2627648 (-) 183 WP_003183456.1 YqzE family protein -
  AB684_RS13565 (AB684_13565) comGG 2627737..2628102 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  AB684_RS13570 (AB684_13570) comGF 2628115..2628495 (-) 381 WP_016885935.1 competence type IV pilus minor pilin ComGF -
  AB684_RS13575 (AB684_13575) comGE 2628512..2628859 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  AB684_RS13580 (AB684_13580) comGD 2628843..2629280 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  AB684_RS13585 (AB684_13585) comGC 2629286..2629579 (-) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  AB684_RS13590 (AB684_13590) comGB 2629593..2630627 (-) 1035 WP_011198115.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB684_RS13595 (AB684_13595) comGA 2630617..2631681 (-) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  AB684_RS13600 (AB684_13600) - 2631838..2632677 (-) 840 WP_003183480.1 STAS domain-containing protein -
  AB684_RS13610 (AB684_13610) - 2632919..2633296 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AB684_RS13615 (AB684_13615) - 2633505..2633750 (+) 246 WP_003183483.1 DUF2626 domain-containing protein -
  AB684_RS13620 (AB684_13620) - 2633788..2634426 (-) 639 WP_003183485.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10725.62 Da        Isoelectric Point: 9.1200

>NTDB_id=173881 AB684_RS13585 WP_003183466.1 2629286..2629579(-) (comGC) [Bacillus licheniformis strain HRBL-15TDI7]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=173881 AB684_RS13585 WP_003183466.1 2629286..2629579(-) (comGC) [Bacillus licheniformis strain HRBL-15TDI7]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCC
GAATGTGACCAAGCATAACCAAAGCATCCAAAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGG
CCTATCAGATGGATCATGACGGGAAAACGCCGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAG
TGTCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

44.211

97.938

0.433
  comGC Staphylococcus aureus N315

44.211

97.938

0.433

Multiple sequence alignment