Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AB684_RS13535 | Genome accession | NZ_CP014781 |
| Coordinates | 2624228..2624563 (+) | Length | 111 a.a. |
| NCBI ID | WP_025804940.1 | Uniprot ID | A0AB37GFT9 |
| Organism | Bacillus licheniformis strain HRBL-15TDI7 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2619228..2629563
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB684_RS13515 (AB684_13515) | gcvT | 2619660..2620754 (-) | 1095 | WP_003183436.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AB684_RS13520 (AB684_13520) | - | 2621347..2623026 (+) | 1680 | WP_003183439.1 | DEAD/DEAH box helicase | - |
| AB684_RS13525 (AB684_13525) | - | 2623033..2623827 (+) | 795 | WP_003183441.1 | YqhG family protein | - |
| AB684_RS13530 (AB684_13530) | sinI | 2624018..2624194 (+) | 177 | WP_003183444.1 | anti-repressor SinI | Regulator |
| AB684_RS13535 (AB684_13535) | sinR | 2624228..2624563 (+) | 336 | WP_025804940.1 | transcriptional regulator SinR | Regulator |
| AB684_RS13540 (AB684_13540) | tasA | 2624668..2625462 (-) | 795 | WP_003183447.1 | biofilm matrix protein TasA | - |
| AB684_RS13545 (AB684_13545) | sipW | 2625536..2626120 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| AB684_RS13550 (AB684_13550) | tapA | 2626117..2626845 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AB684_RS13555 (AB684_13555) | - | 2627122..2627442 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| AB684_RS13560 (AB684_13560) | - | 2627466..2627648 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| AB684_RS13565 (AB684_13565) | comGG | 2627737..2628102 (-) | 366 | WP_003183459.1 | competence type IV pilus minor pilin ComGG | - |
| AB684_RS13570 (AB684_13570) | comGF | 2628115..2628495 (-) | 381 | WP_016885935.1 | competence type IV pilus minor pilin ComGF | - |
| AB684_RS13575 (AB684_13575) | comGE | 2628512..2628859 (-) | 348 | WP_009327907.1 | competence type IV pilus minor pilin ComGE | - |
| AB684_RS13580 (AB684_13580) | comGD | 2628843..2629280 (-) | 438 | WP_009327905.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12991.60 Da Isoelectric Point: 5.9495
>NTDB_id=173880 AB684_RS13535 WP_025804940.1 2624228..2624563(+) (sinR) [Bacillus licheniformis strain HRBL-15TDI7]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=173880 AB684_RS13535 WP_025804940.1 2624228..2624563(+) (sinR) [Bacillus licheniformis strain HRBL-15TDI7]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |