Detailed information NTG0173778

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: A0W33_RS08295
• Genome accession: NZ_CP014766
• Coordinates: 1961075..1962454 (-)
• Length: 459 a.a.
• NCBI ID: WP_068837716.1
• Uniprot ID: A0A1I7I2P1
• Organism: Pontibacter akesuensis strain AKS 1T
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1956075..1967454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0W33_RS08280	-	1956701..1957723 (-)	1023	WP_068837713.1	SPASM domain-containing protein	-
A0W33_RS08285	-	1957838..1959025 (-)	1188	WP_068837714.1	hypothetical protein	-
A0W33_RS08290	-	1959241..1960662 (-)	1422	WP_068837715.1	peroxiredoxin	-
A0W33_RS08295	radA	1961075..1962454 (-)	1380	WP_068837716.1	DNA repair protein RadA	Machinery gene
A0W33_RS08305	-	1962793..1965714 (-)	2922	WP_068837718.1	CHASE domain-containing protein	-
A0W33_RS08310	-	1965973..1966455 (+)	483	WP_068837719.1	DUF962 domain-containing protein	-
A0W33_RS08315	-	1966480..1967196 (+)	717	WP_068837720.1	hypothetical protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 49822.97 Da
• Isoelectric Point: 5.7734

>NTDB_id=173778 A0W33_RS08295 WP_068837716.1 1961075..1962454(-) (radA) [Pontibacter akesuensis strain AKS 1T]
MAKIKTSYFCQNCGAQSAKWIGKCPACGEWNTYVEEVVQREEVTPTTAWKVGSSTAQVSNKPKSIADISYQEQHRIVTPD
QELNRVLGGGIVPGSMVLIGGEPGIGKSTLMLQIALGLSGLKVLYVSGEESEQQIKMRAERLTAQTSDCFILTETGTQNI
FKQVELVRPQVLIIDSIQTLHSSFIEAGAGSVSQVRECTAELLKFAKESGTPVFLIGHITKEGNLAGPKILEHMVDTVLQ
FEGDRHMTYRILRTTKNRFGSTSELGIYEMLGTGLREVSNPSEILISQREDAFSGISIGATLEGNRPLLIEVQSLVSPAT
YGTPQRTSTGFDGKRLNMLLAVLEKRGGYRLGAQDVFLNIAGGLKVEDPALDLAVCASILSSFEDIAIPSTAAFAAEVGL
GGEVRAVNRVENRITEAEKLGFTDIYISKYNKKGVDLSKFSINIHAYGRLEEVFGSLFG

Nucleotide

• Length: 1380 bp

>NTDB_id=173778 A0W33_RS08295 WP_068837716.1 1961075..1962454(-) (radA) [Pontibacter akesuensis strain AKS 1T]
ATGGCTAAAATAAAAACATCCTACTTCTGCCAGAACTGCGGCGCCCAATCGGCCAAATGGATAGGCAAATGCCCCGCCTG
CGGCGAGTGGAACACCTATGTGGAAGAAGTAGTGCAGCGCGAGGAGGTAACGCCCACCACCGCCTGGAAAGTGGGCAGCA
GCACGGCGCAGGTGTCCAACAAGCCCAAATCCATCGCCGACATCAGTTACCAGGAGCAGCACCGCATTGTTACGCCGGAT
CAGGAGCTGAACCGGGTGCTGGGCGGCGGCATTGTGCCAGGCTCCATGGTACTCATTGGGGGCGAGCCGGGTATTGGCAA
AAGTACGCTGATGCTGCAGATTGCCCTAGGCCTAAGCGGCCTGAAGGTGCTGTACGTGAGCGGAGAGGAAAGCGAGCAGC
AGATTAAGATGCGCGCCGAGCGCCTCACCGCCCAAACCTCCGACTGTTTTATACTTACCGAAACCGGAACGCAGAACATC
TTTAAGCAGGTAGAGCTGGTGCGTCCTCAGGTACTTATCATCGACTCCATCCAGACGCTCCACTCCTCTTTTATTGAGGC
GGGTGCGGGCAGCGTAAGCCAGGTGCGCGAGTGCACGGCCGAACTGCTGAAGTTTGCCAAAGAGAGCGGCACCCCCGTCT
TCCTGATCGGCCACATCACCAAAGAAGGAAACCTGGCTGGCCCGAAGATACTGGAGCACATGGTGGATACGGTGCTGCAG
TTTGAGGGCGATCGCCACATGACGTACCGCATCCTGCGCACCACCAAAAACCGCTTTGGCTCCACTTCAGAACTGGGCAT
TTACGAAATGCTGGGCACCGGCCTGCGCGAAGTGAGCAACCCGTCGGAGATACTGATCTCACAGCGGGAGGACGCCTTTA
GCGGTATAAGTATAGGCGCGACGCTGGAGGGCAACCGCCCGCTGCTGATAGAGGTGCAGAGCCTGGTGAGCCCCGCCACG
TACGGCACGCCGCAGCGCACCAGCACCGGCTTTGATGGGAAGCGCCTGAACATGCTGCTGGCGGTGCTGGAGAAACGCGG
TGGCTACCGCCTTGGCGCCCAGGACGTGTTCCTGAACATTGCCGGTGGCCTGAAGGTGGAGGACCCTGCGCTTGATCTGG
CTGTGTGCGCCTCTATCCTCTCCTCTTTCGAAGATATTGCGATTCCTAGCACAGCTGCTTTTGCAGCGGAGGTAGGTTTG
GGAGGCGAGGTGCGAGCCGTAAATCGCGTGGAGAACCGCATTACCGAGGCCGAAAAGCTGGGCTTCACCGATATCTATAT
CTCAAAGTATAACAAAAAAGGGGTAGACCTAAGTAAGTTTTCCATCAACATCCACGCCTATGGCCGATTAGAGGAGGTGT
TTGGCAGCTTGTTCGGATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (71-223)

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A1I7I2P1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	51.087	100	0.512
radA	Streptococcus pneumoniae Rx1	51.087	100	0.512
radA	Streptococcus pneumoniae D39	51.087	100	0.512
radA	Streptococcus pneumoniae TIGR4	51.087	100	0.512
radA	Streptococcus mitis NCTC 12261	49.677	100	0.503
radA	Streptococcus mitis SK321	49.462	100	0.501
radA	Bacillus subtilis subsp. subtilis str. 168	52.064	94.989	0.495