Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSR20_RS02850 Genome accession   NZ_CP018189
Coordinates   561318..561962 (+) Length   214 a.a.
NCBI ID   WP_002884791.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 556318..566962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS02830 (BSR20_02835) stkP/pknB 556677..558557 (+) 1881 WP_045768525.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  BSR20_RS02835 (BSR20_02840) - 558702..559460 (+) 759 WP_156209489.1 potassium channel family protein -
  BSR20_RS02840 (BSR20_02845) liaF 559623..560321 (+) 699 WP_002886862.1 cell wall-active antibiotics response protein LiaF -
  BSR20_RS02845 (BSR20_02850) - 560318..561328 (+) 1011 WP_045768527.1 sensor histidine kinase -
  BSR20_RS02850 (BSR20_02855) vraR 561318..561962 (+) 645 WP_002884791.1 response regulator transcription factor Regulator
  BSR20_RS02865 (BSR20_02870) rimM 562657..563175 (+) 519 WP_002884411.1 ribosome maturation factor RimM -
  BSR20_RS02870 (BSR20_02875) trmD 563165..563884 (+) 720 WP_002886864.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  BSR20_RS02875 (BSR20_02880) - 563886..564884 (+) 999 WP_070579774.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23977.31 Da        Isoelectric Point: 4.5814

>NTDB_id=173728 BSR20_RS02850 WP_002884791.1 561318..561962(+) (vraR) [Streptococcus salivarius strain ICDC3]
MSNKINVILVDDHEMVRLGLKSFLNLQGDVEVVGEAGNGREGVDLALELRPDVVVMDLVMPELDGVQATLELLKEWPEAK
ILVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALL
AKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVSQDDE

Nucleotide


Download         Length: 645 bp        

>NTDB_id=173728 BSR20_RS02850 WP_002884791.1 561318..561962(+) (vraR) [Streptococcus salivarius strain ICDC3]
ATGTCGAATAAGATTAATGTGATTTTGGTCGATGACCATGAGATGGTCCGTTTGGGCCTTAAGAGTTTCTTGAATCTCCA
AGGAGATGTAGAAGTAGTTGGGGAGGCAGGGAATGGTCGAGAGGGTGTCGATCTTGCCTTGGAACTGCGTCCGGATGTCG
TCGTTATGGACCTTGTTATGCCTGAATTGGATGGTGTTCAAGCGACTTTGGAATTGCTCAAAGAATGGCCTGAAGCCAAG
ATTTTGGTTTTGACTAGCTATTTGGACAATGAAAAAATTTATCCAGTCATTGAAGCTGGTGCTAAAGGCTATATGCTTAA
AACCAGCAGTGCGGCAGAGATTCTCAATAGTATCCGTAAGGTTTACCGTGGTGAAGAAGCTATCGAAACTGAGGTGGACA
ATAAGATTAAATACCATGATAGCCATCCGGACCTACACGATGACTTGACGGCACGTGAACGTGATATCTTGGCCCTTTTG
GCTAAGGGGTATGACAATCAAACTATTGCTAATGAGCTATTTATTTCATTGAAAACCGTTAAAACTCACGTGTCTAATAT
CCTTGGAAAACTCAATGTTGATGACCGTACTCAGGCAGTCGTTTATGCCTTTAGACATCATTTGGTTTCGCAGGATGATG
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(7-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.485

96.262

0.486
  degU Bacillus subtilis subsp. subtilis str. 168

36.161

100

0.379