Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   A1D13_RS12040 Genome accession   NZ_CP014759
Coordinates   2646977..2647681 (+) Length   234 a.a.
NCBI ID   WP_370696083.1    Uniprot ID   -
Organism   Legionella pneumophila strain F4468     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2641977..2652681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D13_RS12015 (A1D13_11725) - 2643209..2644087 (+) 879 WP_027225184.1 lpg2327 family Dot/Icm T4SS effector -
  A1D13_RS12020 (A1D13_11730) - 2644351..2644734 (+) 384 WP_027225185.1 hypothetical protein -
  A1D13_RS12025 (A1D13_11735) - 2644928..2645158 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  A1D13_RS12030 (A1D13_11740) - 2645139..2646035 (+) 897 WP_027225186.1 polyprenyl synthetase family protein -
  A1D13_RS12035 (A1D13_11745) bioC 2646079..2646933 (-) 855 WP_015961430.1 malonyl-ACP O-methyltransferase BioC -
  A1D13_RS12040 (A1D13_11750) comFC 2646977..2647681 (+) 705 WP_370696083.1 ComF family protein Machinery gene
  A1D13_RS12045 (A1D13_11755) - 2647710..2648783 (-) 1074 WP_027225188.1 M50 family metallopeptidase -
  A1D13_RS12050 (A1D13_11760) - 2648840..2649118 (-) 279 WP_027222429.1 hypothetical protein -
  A1D13_RS12055 (A1D13_11765) hemA 2649437..2650711 (+) 1275 WP_027225189.1 glutamyl-tRNA reductase -
  A1D13_RS12060 (A1D13_11770) prfA 2650695..2651783 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  A1D13_RS12065 (A1D13_11775) prmC 2651776..2652639 (+) 864 WP_027225190.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26810.42 Da        Isoelectric Point: 9.2758

>NTDB_id=173699 A1D13_RS12040 WP_370696083.1 2646977..2647681(+) (comFC) [Legionella pneumophila strain F4468]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLNALPKSALKPDCLIPVPMYPKRLKRRGFNQAAVLTRLLARQLKIPYDLHYCQ
KIINTDSQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARAVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=173699 A1D13_RS12040 WP_370696083.1 2646977..2647681(+) (comFC) [Legionella pneumophila strain F4468]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAACTTGGATCTTGCTGCCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGCCAATGTGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCCTATCGTTTT
GAAGAGCCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTAATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGTATCCCAAACGATTAAAACGAA
GGGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAAAATCCCTTATGATTTACATTATTGCCAA
AAAATAATCAATACCGACTCACAAGCTAACCTTGATGGAGAGCAACGAAGAAAAAATTTACGTCATGCTTTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGATTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGGGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGGCTGTAACTAAGAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

97.436

100

0.974
  comFC Legionella pneumophila strain ERS1305867

96.939

83.761

0.812

Multiple sequence alignment