Detailed information NTG0173636

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ASQ50_RS15410
• Genome accession: NZ_CP014754
• Coordinates: 3354775..3356160 (-)
• Length: 461 a.a.
• NCBI ID: WP_058091306.1
• Uniprot ID: -
• Organism: Marinobacter sp. LQ44
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3349775..3361160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ASQ50_RS15395 (ASQ50_15390)	-	3349958..3353659 (+)	3702	WP_058091303.1	pilus assembly protein	-
ASQ50_RS21670 (ASQ50_15395)	-	3353673..3354146 (+)	474	WP_058091304.1	type IV pilin protein	-
ASQ50_RS15405 (ASQ50_15400)	-	3354157..3354717 (-)	561	WP_058091305.1	GspH/FimT family protein	-
ASQ50_RS15410 (ASQ50_15405)	pilR	3354775..3356160 (-)	1386	WP_058091306.1	sigma-54-dependent transcriptional regulator	Regulator
ASQ50_RS15415 (ASQ50_15410)	-	3356215..3357861 (-)	1647	WP_058091307.1	sensor histidine kinase	-
ASQ50_RS15420 (ASQ50_15415)	-	3357955..3359619 (+)	1665	WP_058091308.1	NAD+ synthase	-
ASQ50_RS15425 (ASQ50_15420)	-	3359686..3360519 (-)	834	WP_058091309.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50837.07 Da
• Isoelectric Point: 4.8974

>NTDB_id=173636 ASQ50_RS15410 WP_058091306.1 3354775..3356160(-) (pilR) [Marinobacter sp. LQ44]
MTHQTALIVDDEPDIRDLLEITLTRMGITTYTAPDLTTARTLLEQYKPQLCLTDMNLPDGNGIDLVHWIQQHTPCTPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKIQDTAESDEPGLLLGKSPQIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHMQGPRADGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKEGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERAEDISLLA
DHILQRIAREYECDPAKLTPAAIDRLQGYDFPGNVRELENILERAFTLCDEDFIDAADLHLGGGAIPGTPVSERSSDTGT
SEAPAPVPEGEIDLEGFLENIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=173636 ASQ50_RS15410 WP_058091306.1 3354775..3356160(-) (pilR) [Marinobacter sp. LQ44]
ATGACACACCAAACAGCGCTGATTGTTGACGACGAACCGGATATCCGGGACTTACTGGAAATCACCCTCACCCGCATGGG
GATTACCACCTACACCGCACCGGACCTGACTACAGCACGGACCTTGCTTGAACAGTACAAGCCCCAACTGTGCCTGACCG
ACATGAACCTGCCGGACGGCAACGGTATAGACCTAGTGCATTGGATTCAGCAGCACACCCCCTGCACGCCGGTTGCCGTC
ATCACTGCCTACGGCAACATGGACACCGCCATCGAATCACTCAAGGCCGGCGCCTTCGATTTTGTATCCAAGCCCGTGGA
ACTGCCCCGCCTGAGGGAACTGGTAAACAGCGCCCTGAAGCTGAGCGAACCGAAAATCCAGGACACCGCAGAATCCGATG
AACCCGGCCTTCTGCTCGGTAAGTCCCCACAAATCCGCAAGCTGCGAAACCAGACCCGCAAGCTGGCCCGCAGCCAGGCG
CCAGTGTTTATCAGCGGCGAATCCGGCAGTGGAAAAGAGCTGGTCGCCCGCATGATCCACATGCAGGGCCCGCGGGCCGA
TGGCCCCTTTATCGCCGTTAACTGCGGCGCCATCCCTTCGGAACTGATGGAAAGCGAATTCTTTGGCCACAAGAAAGGCA
GTTTTACCGGTGCGGTCGAAAACAAGGAGGGCCTGTTCCGAAGCGCCAACGGCGGCACCCTGTTCCTGGACGAAGTCGCC
GACCTGCCCCTGGCCATGCAGGTAAAGCTGCTGCGCGCCATTCAGGAAAAAGCCGTGCGGCCGGTGGGCGACACCAAGGA
AGTGCCAGTAGATATCCGCGTACTCAGCGCCACCCACAAAAACCTGCCTGAACTGGTGCAGGAAGGCAGCTTCCGTCAGG
ACCTGTTCTACCGCATTAACGTGATTGAACTGGCGGTACCGCCTCTGCGCGAGCGGGCGGAAGACATTTCCCTGCTGGCC
GACCATATTCTGCAGCGCATCGCCCGAGAGTACGAATGCGATCCGGCCAAACTAACGCCAGCCGCAATAGATCGCCTGCA
GGGATACGATTTCCCCGGCAACGTGCGGGAACTGGAAAATATTCTGGAGCGGGCGTTTACGCTGTGTGATGAAGATTTTA
TTGATGCGGCTGATTTGCATCTGGGTGGCGGTGCTATTCCCGGAACCCCGGTATCGGAGCGCAGCTCTGACACTGGCACA
TCAGAGGCTCCTGCTCCTGTGCCCGAGGGGGAGATAGACCTGGAAGGCTTTCTGGAGAACATCGAGCGGCAGGCGATTGA
GAAGGCGCTGGAGGCGACGCGATGGAACAAGACGGCGGCGGCCAAGAGATTGGGGATCAGTTTTCGGGCGTTGCGGTATC
GGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Bacterial regulatory protein, Fis family (HTH_8) (417-458)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.124	100	0.631
pilR	Acinetobacter baumannii strain A118	54.113	100	0.542