Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   BSR19_RS00330 Genome accession   NZ_CP018187
Coordinates   55539..58070 (+) Length   843 a.a.
NCBI ID   WP_414820569.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 50539..63070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS00310 (BSR19_00310) purB 50711..52009 (+) 1299 WP_060972888.1 adenylosuccinate lyase -
  BSR19_RS00315 (BSR19_00315) argS 52886..54577 (-) 1692 WP_060972889.1 arginine--tRNA ligase -
  BSR19_RS00320 (BSR19_00320) argR 54732..55160 (+) 429 WP_171963598.1 arginine repressor -
  BSR19_RS00325 (BSR19_00325) - 55160..55519 (+) 360 WP_060972890.1 YlbF family regulator -
  BSR19_RS00330 (BSR19_00330) hexA 55539..58070 (+) 2532 WP_414820569.1 DNA mismatch repair protein MutS Machinery gene
  BSR19_RS00335 (BSR19_00335) - 58104..58559 (-) 456 WP_060972892.1 DUF3021 domain-containing protein -
  BSR19_RS00340 (BSR19_00340) - 58556..58993 (-) 438 WP_013989911.1 LytTR family DNA-binding domain-containing protein -
  BSR19_RS00345 (BSR19_00345) - 59172..59477 (+) 306 WP_037603797.1 hypothetical protein -
  BSR19_RS00350 (BSR19_00350) hexB 59529..61466 (+) 1938 WP_060972893.1 DNA mismatch repair endonuclease MutL Machinery gene
  BSR19_RS00355 (BSR19_00355) - 61597..61818 (+) 222 WP_037597288.1 hypothetical protein -
  BSR19_RS00360 (BSR19_00360) ruvA 61975..62565 (+) 591 WP_060972894.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence


Protein


Download         Length: 843 a.a.        Molecular weight: 94591.65 Da        Isoelectric Point: 4.6518

>NTDB_id=173578 BSR19_RS00330 WP_414820569.1 55539..58070(+) (hexA) [Streptococcus salivarius strain ICDC2]
MQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHSAQAYIDVLVEMGYKVAIA
EQMEDPKQAVGVVKREVVQVITPGTVVDSSKPDNANNFLVAIDKVGSRFGLAYMDVSTGEFFATELDDFSSVCSEIQNLK
AREVVVGYDLPEADEQVLVKQLNLLLSKETEVYDDVHLIDTSLTDLESSVAGKLLQYVHRTQMRELSHLQKAQHYEIKDY
LQMSYATKSSLDLLENARTGKKHGSLFWLLDETKTAMGMRLLRTWIDRPLVNQATITERQNIIQVFLDNFFERSDLTESL
KGVYDIERLASRVSFGKANPKDLIQLGHTLAQVPVIKAILESFNDEALSRLLQELDALPELESLIRSAIDPDAPATITEG
GIIRAGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDGYYFHVTNSNLSLVPDHFFRKATLKNSERFG
TAELAKIEGEMLEAREKSSTLEYDIFMRVREQVERYIDRLQSLAKAIATVDVLQSLAVVAETNHYVRPVFNDEHRIVIDQ
GRHAVVEKVMGVQEYIPNTITFDSQTNIQLITGPNMSGKSTYMRQLALSVVMAQMGSYVPADSIDLPVFDAIYTRIGAAD
DLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGAKTMFATHYHELTALSNTLTH
LVNVHVATLEKEGEVTFLHKIVDGPADKSYGIHVAKIAGLPAALLERADTILTQLEGDTVTIQPQEKVSPQEKPATETHV
NEQISLFDDFTENPVLQELRDLDIYNMTPMQVMMAVADLKQKL

Nucleotide


Download         Length: 2532 bp        

>NTDB_id=173578 BSR19_RS00330 WP_414820569.1 55539..58070(+) (hexA) [Streptococcus salivarius strain ICDC2]
ATGCAGCAGTATTTGGATATCAAGGAAAATTATCCAGATGCTTTTTTGCTGTTTCGGATGGGGGATTTTTACGAATTATT
TTACGATGATGCCGTTAAGGCTGCTCAAATTTTGGAAATTAGCCTAACCAGTCGTAATAAGAACGCAGATAATCCCATTC
CTATGGCAGGTGTTCCTTATCATTCGGCTCAAGCCTATATTGATGTCTTGGTTGAGATGGGCTACAAAGTAGCCATTGCT
GAGCAGATGGAGGACCCTAAACAGGCTGTTGGCGTGGTTAAGCGTGAGGTAGTTCAGGTTATCACGCCAGGGACAGTGGT
TGACAGCTCTAAACCTGATAATGCCAACAATTTCTTAGTAGCCATTGACAAGGTTGGAAGTCGATTCGGCCTGGCCTATA
TGGATGTATCAACGGGTGAATTTTTTGCGACAGAGTTGGATGATTTTAGTTCAGTTTGCAGTGAAATTCAGAATCTTAAG
GCACGTGAAGTAGTCGTTGGGTATGATTTACCTGAAGCTGATGAACAAGTTTTGGTGAAGCAACTCAACCTGCTTCTCTC
CAAGGAAACGGAGGTTTACGATGATGTCCACTTGATTGACACTAGTTTGACAGATTTGGAAAGCAGTGTGGCGGGTAAAC
TTCTCCAGTATGTTCATCGTACTCAGATGCGAGAGCTCAGTCATTTACAAAAGGCTCAGCACTATGAGATTAAGGATTAC
TTGCAGATGTCCTATGCGACCAAGTCAAGTTTGGATTTACTGGAAAATGCTAGAACGGGCAAGAAACACGGATCTCTTTT
CTGGCTCTTGGATGAAACCAAGACAGCTATGGGAATGCGTCTCTTGCGAACTTGGATTGATCGTCCTTTAGTGAATCAAG
CCACTATCACCGAGCGTCAGAATATTATCCAAGTTTTCTTGGACAATTTCTTCGAGCGTAGTGACTTGACTGAGAGTCTA
AAAGGTGTTTACGATATTGAGCGACTGGCCAGTCGTGTTTCCTTTGGCAAGGCTAATCCAAAAGATTTGATTCAGCTAGG
TCATACTTTGGCTCAAGTACCGGTGATTAAGGCGATTTTGGAGTCCTTTAATGATGAGGCCTTGTCACGCCTTTTACAAG
AGTTAGATGCTCTGCCAGAATTAGAGAGTTTGATTCGGTCGGCTATTGATCCAGATGCTCCTGCAACCATTACAGAAGGT
GGCATTATCCGTGCTGGTTTTGATGAGACCTTGGACAAGTATCGCAAGGTGATGAGTGAGGGAACCTCATGGATCGCAGA
TATCGAAGCTAAAGAACGTGAAGCGTCTGGTATTACAACACTAAAGATTGATTATAACCGTAAAGATGGTTATTACTTCC
ATGTGACCAACTCTAACCTTAGCTTGGTTCCTGACCATTTCTTCCGCAAGGCAACTCTGAAAAATTCAGAGCGCTTTGGA
ACTGCTGAGTTGGCTAAAATTGAAGGTGAGATGCTTGAGGCGCGTGAAAAATCATCAACGCTAGAGTATGATATTTTCAT
GCGTGTCCGTGAGCAGGTGGAACGCTATATTGACCGTTTGCAATCTTTGGCTAAAGCTATTGCGACAGTCGATGTGCTTC
AGAGTCTAGCTGTTGTAGCAGAGACCAATCATTATGTTCGTCCTGTGTTCAATGATGAGCATCGTATTGTTATTGATCAA
GGCCGTCATGCAGTGGTTGAGAAGGTTATGGGCGTTCAAGAATACATTCCAAACACCATTACCTTTGACAGTCAGACCAA
TATTCAGCTCATCACAGGACCAAATATGAGTGGTAAATCCACCTATATGCGTCAGTTAGCCTTGTCAGTCGTTATGGCTC
AGATGGGGTCTTACGTGCCAGCAGATAGTATTGACTTGCCAGTTTTTGACGCCATCTATACACGTATTGGTGCTGCAGAT
GACCTGATTTCAGGCCAGTCGACCTTCATGGTTGAGATGATGGAGGCTAATCAGGCCATTAAGCGAGCGACACCTAATTC
CTTGATTATTTTTGATGAGTTGGGACGTGGGACAGCCACCTATGACGGTATGGCTCTGGCCCAGTCTATCATTGAGTTTA
TTCATGACAAGGTGGGGGCTAAAACCATGTTTGCGACCCATTATCATGAGTTGACAGCTCTGTCAAATACTTTGACACAC
CTTGTCAACGTTCATGTGGCGACACTTGAAAAGGAAGGTGAGGTGACTTTCCTTCACAAGATTGTCGATGGCCCAGCCGA
TAAATCTTATGGTATTCATGTGGCTAAGATTGCAGGTTTACCAGCAGCTTTACTGGAACGTGCTGACACCATCTTGACAC
AACTAGAGGGCGATACAGTTACCATCCAACCTCAGGAAAAGGTATCGCCTCAAGAGAAACCTGCCACTGAAACGCATGTC
AACGAGCAAATCTCTCTCTTTGATGATTTTACTGAAAATCCAGTTCTTCAAGAGTTGCGTGATTTGGACATTTACAATAT
GACACCTATGCAAGTCATGATGGCTGTAGCAGATTTAAAACAGAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

74.021

100

0.74

  mutS Pseudomonas stutzeri strain ATCC 17587

35.963

100

0.368