Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   A0V43_RS01530 Genome accession   NZ_CP014749
Coordinates   290113..291936 (+) Length   607 a.a.
NCBI ID   WP_063192217.1    Uniprot ID   A0A142CYM8
Organism   Geobacillus sp. JS12     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 285113..296936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0V43_RS01510 (A0V43_01510) - 285441..286100 (-) 660 WP_014195176.1 TerC family protein -
  A0V43_RS01515 (A0V43_01515) mecA 286311..286991 (+) 681 WP_020753707.1 adaptor protein MecA -
  A0V43_RS01520 (A0V43_01520) cls 287088..288596 (+) 1509 WP_011230321.1 cardiolipin synthase -
  A0V43_RS01525 (A0V43_01525) - 288784..290103 (+) 1320 WP_063192216.1 competence protein CoiA family protein -
  A0V43_RS01530 (A0V43_01530) pepF 290113..291936 (+) 1824 WP_063192217.1 oligoendopeptidase F Regulator
  A0V43_RS01535 (A0V43_01535) - 291950..292147 (-) 198 WP_063192218.1 hypothetical protein -
  A0V43_RS01540 (A0V43_01540) spxH 292573..293466 (-) 894 WP_011230325.1 ClpXP adapter protein SpxH -
  A0V43_RS01545 (A0V43_01545) - 293459..293871 (-) 413 Protein_327 globin -
  A0V43_RS01550 (A0V43_01550) - 293974..294597 (-) 624 WP_063192219.1 lytic transglycosylase domain-containing protein -
  A0V43_RS01555 (A0V43_01555) - 294594..295187 (-) 594 WP_063192220.1 CYTH domain-containing protein -
  A0V43_RS01560 (A0V43_01560) - 295323..295700 (+) 378 WP_015374165.1 hypothetical protein -
  A0V43_RS01565 (A0V43_01565) - 295828..296466 (+) 639 WP_011230330.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70243.37 Da        Isoelectric Point: 5.1482

>NTDB_id=173580 A0V43_RS01530 WP_063192217.1 290113..291936(+) (pepF) [Geobacillus sp. JS12]
MTVEEKKAKKSLPLRSEIPVGETWRLEDIFPTDDAWEEEFKQVKAMIPKLGEYKGRLGESPEVLYEALKCQDDVSMRLGK
LYTYAHMRYDQDTTNSFYQGLDARAKSLYSEASSAMAFIVPEILAIDEAVLRSFLEQYEPLRLYAHALDEITRQRPHVLS
AEEEAILAQAAEVMQATSNTFSALNNADLTFPTIIDENGEEVEVTHGRFIRFLESTDRRVRRDAFYAVYHTYEKFQNTFA
NTLAGTVKKDNFFARIRRYRSAREAALDANNIPESVYDNLIATIHEHLPLLHRYVRLRKRVLGLDELHMYDLYTPLVQDV
KMEVTYEEAKQYMLEGLAPLGEEYVAIVKEGLDNRWVDVRENKGKRSGAYSSGAYGTHPYILLNWQDNVNNLFTLVHEFG
HSVHSYYTRKTQPYPYAHYSIFVAEVASTCNEALLNDYLLRTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHLK
AQQGEALTAETLTSLYYDLNKTYFGDDIVVDKEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVRRYID
FLKAGSSDYPIEVLKKAGVDMTSAEPIRQACQVFAEKLDEMERLLEK

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=173580 A0V43_RS01530 WP_063192217.1 290113..291936(+) (pepF) [Geobacillus sp. JS12]
ATGACGGTGGAGGAGAAGAAAGCGAAAAAATCGCTGCCGCTGCGAAGCGAGATTCCGGTGGGAGAAACGTGGCGGCTTGA
GGACATTTTTCCCACCGATGACGCCTGGGAAGAAGAGTTCAAACAAGTGAAGGCGATGATTCCAAAGCTTGGCGAATACA
AAGGGCGGCTTGGCGAATCGCCGGAAGTGTTGTATGAAGCGCTGAAATGCCAAGATGACGTATCGATGCGCCTCGGCAAG
CTGTATACATACGCCCATATGCGCTATGATCAAGATACGACCAATTCGTTTTACCAAGGGCTCGACGCCCGGGCGAAAAG
CTTGTACAGCGAAGCATCGAGCGCGATGGCGTTTATCGTGCCGGAAATTTTGGCGATCGATGAAGCGGTGCTGCGCTCGT
TTTTGGAACAATACGAGCCGCTTCGCTTGTATGCGCACGCGTTAGACGAGATTACGCGCCAGCGCCCGCATGTGCTGTCG
GCGGAAGAGGAGGCGATCTTGGCGCAGGCTGCCGAGGTGATGCAGGCGACATCCAATACGTTCAGCGCGCTGAACAATGC
TGATTTAACGTTTCCGACGATCATCGATGAAAATGGCGAGGAAGTCGAAGTCACGCACGGCCGGTTCATCCGTTTTTTAG
AAAGCACGGACCGCCGCGTCCGCCGCGATGCGTTTTACGCCGTATACCATACGTATGAGAAGTTTCAAAATACGTTCGCC
AATACGCTTGCCGGCACGGTGAAAAAAGACAACTTTTTCGCCCGCATCCGCCGCTACCGTTCGGCGCGGGAAGCGGCGTT
GGATGCCAACAACATTCCGGAGAGCGTCTATGACAACCTAATTGCTACGATTCATGAACATTTGCCATTGCTGCACCGGT
ATGTGCGGCTGCGCAAACGAGTGCTTGGGCTTGATGAGCTGCATATGTACGACTTGTACACGCCGCTTGTCCAAGATGTG
AAAATGGAAGTGACGTACGAGGAAGCGAAGCAATATATGCTTGAAGGGCTCGCGCCGCTTGGCGAGGAATATGTGGCGAT
CGTGAAAGAAGGTCTTGACAACCGTTGGGTCGATGTGCGCGAAAACAAAGGAAAGCGAAGCGGCGCCTATTCGTCGGGAG
CGTACGGCACCCATCCGTACATTTTGCTCAACTGGCAGGACAATGTGAACAATTTGTTTACACTTGTGCATGAGTTTGGC
CATTCGGTGCACAGCTACTATACGCGCAAAACGCAGCCGTATCCGTATGCGCATTATTCAATTTTCGTCGCCGAAGTGGC
GTCAACATGCAATGAGGCGCTGTTGAACGACTATTTGCTGAGAACGATCGATGATGAGAAAAAGCGGCTCTATTTGCTCA
ACCATTATCTTGAGGGGTTCCGCGGCACGGTTTTTCGCCAGACGATGTTCGCGGAGTTTGAGCATTTGATCCATTTGAAG
GCGCAACAAGGCGAGGCATTGACGGCCGAGACGTTGACGTCCCTTTATTACGACTTAAATAAAACGTATTTTGGCGATGA
TATTGTCGTGGACAAAGAAATCGGCCTCGAGTGGGCGCGCATTCCGCATTTTTATTACAACTACTATGTGTACCAATACG
CAACCGGCTTCAGCGCGGCGACTGCACTTAGCAAACAAATTTTGGAAGAAGGCGAACCGGCGGTGAGACGGTACATCGAC
TTTTTAAAAGCCGGCAGTTCTGATTACCCGATTGAAGTATTGAAAAAAGCCGGCGTCGACATGACGAGCGCCGAGCCGAT
CCGCCAAGCGTGCCAAGTGTTTGCGGAGAAGCTTGATGAGATGGAGCGGCTGCTTGAGAAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(213-592)

Oligopeptidase F (Peptidase_M3_N)

(122-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142CYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.927

97.694

0.498

Multiple sequence alignment