Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AS588_RS16430 Genome accession   NZ_CP014700
Coordinates   3407821..3408510 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain S499     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3402821..3413510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS16395 (AS588_16395) - 3403019..3403501 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AS588_RS16400 (AS588_16400) flgM 3403516..3403782 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AS588_RS16405 (AS588_16405) - 3403852..3404271 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AS588_RS16410 (AS588_16410) comFC 3404345..3405034 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  AS588_RS16415 (AS588_16415) - 3405040..3405324 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AS588_RS16420 (AS588_16420) comFA 3405382..3406767 (-) 1386 WP_015387627.1 DEAD/DEAH box helicase Machinery gene
  AS588_RS16425 (AS588_16425) - 3406875..3407723 (-) 849 WP_003151387.1 DegV family protein -
  AS588_RS16430 (AS588_16430) degU 3407821..3408510 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AS588_RS16435 (AS588_16435) degS 3408587..3409750 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  AS588_RS16440 (AS588_16440) - 3409973..3410620 (+) 648 WP_003151384.1 YigZ family protein -
  AS588_RS16445 (AS588_16445) - 3410625..3411839 (+) 1215 WP_015387625.1 LCP family protein -
  AS588_RS16450 (AS588_16450) - 3411929..3413005 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=173455 AS588_RS16430 WP_003219701.1 3407821..3408510(-) (degU) [Bacillus amyloliquefaciens strain S499]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=173455 AS588_RS16430 WP_003219701.1 3407821..3408510(-) (degU) [Bacillus amyloliquefaciens strain S499]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment