Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   A0U95_RS24950 Genome accession   NZ_CP014693
Coordinates   5699026..5699661 (+) Length   211 a.a.
NCBI ID   WP_162254895.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum strain L13-6-12     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5694026..5704661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0U95_RS24930 (A0U95_24890) - 5694222..5695154 (+) 933 WP_003204301.1 ABC transporter ATP-binding protein -
  A0U95_RS24935 (A0U95_24895) - 5695157..5695936 (+) 780 WP_003204300.1 ABC transporter permease -
  A0U95_RS24940 (A0U95_24900) - 5696023..5696538 (-) 516 WP_003204298.1 DUF2062 domain-containing protein -
  A0U95_RS24945 (A0U95_24905) comA 5696683..5698929 (+) 2247 WP_069971469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A0U95_RS24950 (A0U95_24910) exbB 5699026..5699661 (+) 636 WP_162254895.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  A0U95_RS24955 (A0U95_24915) - 5699658..5700086 (+) 429 WP_013694002.1 ExbD/TolR family protein -
  A0U95_RS24960 (A0U95_24920) lpxK 5700086..5701096 (+) 1011 WP_069971470.1 tetraacyldisaccharide 4'-kinase -
  A0U95_RS24965 (A0U95_24925) - 5701120..5701305 (+) 186 WP_003179363.1 Trm112 family protein -
  A0U95_RS24970 (A0U95_24930) kdsB 5701302..5702066 (+) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  A0U95_RS24975 (A0U95_24935) - 5702066..5702530 (+) 465 WP_013694001.1 low molecular weight protein-tyrosine-phosphatase -
  A0U95_RS24980 (A0U95_24940) murB 5702527..5703546 (+) 1020 WP_003204282.1 UDP-N-acetylmuramate dehydrogenase -
  A0U95_RS24985 (A0U95_24945) - 5703812..5704282 (+) 471 WP_003204280.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22799.92 Da        Isoelectric Point: 8.0840

>NTDB_id=173307 A0U95_RS24950 WP_162254895.1 5699026..5699661(+) (exbB) [Pseudomonas brassicacearum strain L13-6-12]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYISTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=173307 A0U95_RS24950 WP_162254895.1 5699026..5699661(+) (exbB) [Pseudomonas brassicacearum strain L13-6-12]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCCTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAACGCTATAT
CAGCACCCTCGGGACCATCGCCGCCATGTCCCCACTGTTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTTACCGGCTCCGGCATGACCACCAACGCCGCGGTACTGGCGGGGGGCATTTCCAAAGCCTTGATCACCACCGCC
GCCGGCCTGATGGTGGGTATTCCGGCCGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAATTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment