Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   BSF20_RS18725 Genome accession   NZ_CP018152
Coordinates   3743005..3743454 (-) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3738005..3748454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS18690 (BSF20_18320) sepM 3738101..3739123 (-) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator
  BSF20_RS18695 (BSF20_18325) - 3739129..3739908 (-) 780 WP_015388274.1 patatin family protein -
  BSF20_RS18700 (BSF20_18330) ylbJ 3740088..3741314 (+) 1227 WP_044053185.1 sporulation integral membrane protein YlbJ -
  BSF20_RS18705 (BSF20_18335) coaD 3741333..3741815 (-) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  BSF20_RS18710 (BSF20_18340) rsmD 3741820..3742374 (-) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BSF20_RS18715 (BSF20_18345) - 3742374..3742583 (-) 210 WP_015388275.1 hypothetical protein -
  BSF20_RS18720 (BSF20_18350) - 3742674..3742946 (-) 273 WP_003154470.1 YlbG family protein -
  BSF20_RS18725 (BSF20_18355) ylbF 3743005..3743454 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  BSF20_RS18730 (BSF20_18360) - 3743525..3743764 (-) 240 WP_003154475.1 YlbE-like family protein -
  BSF20_RS18735 (BSF20_18365) - 3743780..3744190 (-) 411 WP_014304959.1 YlbD family protein -
  BSF20_RS18740 (BSF20_18370) - 3744355..3745395 (-) 1041 WP_003154477.1 CAP domain-containing protein -
  BSF20_RS18745 (BSF20_18375) - 3745480..3745923 (-) 444 WP_003154478.1 CBS domain-containing protein -
  BSF20_RS18750 (BSF20_18380) - 3746064..3746423 (+) 360 WP_044053184.1 YugN family protein -
  BSF20_RS18755 (BSF20_18385) ctaG 3746457..3747341 (-) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  BSF20_RS18760 (BSF20_18390) ctaF 3747366..3747698 (-) 333 WP_003154481.1 cytochrome c oxidase subunit IVB -
  BSF20_RS18765 (BSF20_18395) ctaE 3747701..3748324 (-) 624 WP_003154482.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=173308 BSF20_RS18725 WP_003154472.1 3743005..3743454(-) (ylbF) [Bacillus amyloliquefaciens strain LM2303]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=173308 BSF20_RS18725 WP_003154472.1 3743005..3743454(-) (ylbF) [Bacillus amyloliquefaciens strain LM2303]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAACAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879