Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   BSF20_RS17300 Genome accession   NZ_CP018152
Coordinates   3396444..3397064 (+) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3391444..3402064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS17265 (BSF20_16925) - 3391689..3391862 (+) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BSF20_RS17270 (BSF20_16930) - 3391936..3392154 (-) 219 WP_003153994.1 YneF family protein -
  BSF20_RS17275 (BSF20_16935) sirA 3392240..3392686 (-) 447 WP_044053238.1 sporulation inhibitor of replication protein SirA -
  BSF20_RS17280 (BSF20_16940) recP/tkt 3392838..3394841 (-) 2004 WP_044053237.1 transketolase Machinery gene
  BSF20_RS17285 (BSF20_16945) - 3395008..3395241 (-) 234 WP_003153997.1 DUF896 domain-containing protein -
  BSF20_RS17290 (BSF20_16950) - 3395310..3395960 (-) 651 WP_003153998.1 recombinase family protein -
  BSF20_RS17295 (BSF20_16955) yneA 3395976..3396287 (-) 312 WP_003154001.1 cell division suppressor protein YneA -
  BSF20_RS17300 (BSF20_16960) dinR/lexA 3396444..3397064 (+) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  BSF20_RS17305 (BSF20_16965) - 3397403..3397831 (-) 429 WP_003154006.1 hypothetical protein -
  BSF20_RS17310 (BSF20_16970) - 3397973..3398422 (+) 450 WP_015388182.1 YndM family protein -
  BSF20_RS17315 (BSF20_16975) - 3398450..3399280 (-) 831 WP_003154011.1 prohibitin family protein -
  BSF20_RS20365 - 3399267..3399416 (-) 150 WP_003154013.1 hypothetical protein -
  BSF20_RS17320 (BSF20_16980) - 3399525..3400346 (-) 822 WP_032858647.1 poly-gamma-glutamate hydrolase family protein -
  BSF20_RS17325 (BSF20_16985) - 3400612..3401046 (-) 435 WP_014305062.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=173291 BSF20_RS17300 WP_003154004.1 3396444..3397064(+) (dinR/lexA) [Bacillus amyloliquefaciens strain LM2303]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=173291 BSF20_RS17300 WP_003154004.1 3396444..3397064(+) (dinR/lexA) [Bacillus amyloliquefaciens strain LM2303]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACGAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCATATTCCGAAAAGCCAG
GTTGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAGAGTATGATTGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTGATCGGCGTATTCAGAGCCGTCCATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927