Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BSF20_RS10960 Genome accession   NZ_CP018152
Coordinates   2103862..2104494 (+) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098862..2109494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS10935 (BSF20_10710) - 2100001..2100381 (+) 381 WP_003151789.1 protein liaI -
  BSF20_RS10940 (BSF20_10715) liaH 2100395..2101072 (+) 678 WP_003151791.1 stress responsive protein LiaH -
  BSF20_RS10945 (BSF20_10720) - 2101178..2102047 (+) 870 WP_025853871.1 DUF4097 domain-containing protein -
  BSF20_RS10950 (BSF20_10725) liaF 2102074..2102805 (+) 732 WP_025853872.1 cell wall-active antibiotics response protein LiaF -
  BSF20_RS10955 (BSF20_10730) liaS 2102802..2103884 (+) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  BSF20_RS10960 (BSF20_10735) vraR 2103862..2104494 (+) 633 WP_003151798.1 response regulator transcription factor Regulator
  BSF20_RS10965 (BSF20_10740) - 2104537..2105649 (-) 1113 WP_003151800.1 Ger(x)C family spore germination protein -
  BSF20_RS10970 (BSF20_10745) - 2105646..2106746 (-) 1101 WP_003151802.1 spore germination protein -
  BSF20_RS10975 (BSF20_10750) - 2106721..2108163 (-) 1443 WP_072588404.1 spore germination protein -
  BSF20_RS10980 (BSF20_10755) - 2108280..2108465 (+) 186 WP_003151806.1 YvzF family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=173245 BSF20_RS10960 WP_003151798.1 2103862..2104494(+) (vraR) [Bacillus amyloliquefaciens strain LM2303]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=173245 BSF20_RS10960 WP_003151798.1 2103862..2104494(+) (vraR) [Bacillus amyloliquefaciens strain LM2303]
GTGATTCGAGTGTTACTGATTGATGATCATGAGATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGACCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCAGAAGCCATCAGAGCGGCTGCCAAGGGTGAACCGAAGCTTGAGTCGAAAGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACGAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGTTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39