Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   PG2T_RS07640 Genome accession   NZ_CP014671
Coordinates   1604708..1606039 (+) Length   443 a.a.
NCBI ID   WP_068803934.1    Uniprot ID   A0A1B1YTL8
Organism   Immundisolibacter cernigliae strain TR3.2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1599708..1611039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG2T_RS07620 (PG2T_07635) hfq 1600302..1600565 (-) 264 WP_068803928.1 RNA chaperone Hfq -
  PG2T_RS07625 (PG2T_07640) miaA 1600704..1601633 (-) 930 WP_068803930.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  PG2T_RS07630 (PG2T_07645) - 1601732..1602988 (+) 1257 WP_068803932.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  PG2T_RS07635 (PG2T_07650) - 1602981..1604711 (+) 1731 WP_083214821.1 sensor histidine kinase -
  PG2T_RS07640 (PG2T_07655) pilR 1604708..1606039 (+) 1332 WP_068803934.1 sigma-54-dependent transcriptional regulator Regulator
  PG2T_RS07645 (PG2T_07660) queG 1606053..1607126 (-) 1074 WP_068803936.1 tRNA epoxyqueuosine(34) reductase QueG -
  PG2T_RS07650 (PG2T_07665) - 1607123..1607467 (-) 345 WP_202816460.1 hypothetical protein -
  PG2T_RS07655 (PG2T_07670) - 1607534..1608466 (-) 933 WP_068803938.1 carbohydrate kinase family protein -
  PG2T_RS07660 (PG2T_07675) gcvPB 1608499..1609944 (-) 1446 WP_068803940.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  PG2T_RS07670 (PG2T_07685) - 1610298..1610798 (+) 501 WP_145931040.1 c-type cytochrome -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 47391.48 Da        Isoelectric Point: 5.9135

>NTDB_id=173189 PG2T_RS07640 WP_068803934.1 1604708..1606039(+) (pilR) [Immundisolibacter cernigliae strain TR3.2]
MNALPEDAPRVLIVDDEPDLCELLAITLRGMGLQSDSTGTLVAARQALTDASYRLCLCDLRLPDGSGLELIEHIQRTQPH
LPVAMITAHGDVGAAVAAMKAGAFDFVNKPVNVQGLRGLIDQALRLSRVRAEAGTVPSLIGESPAMQALRVMVAKLARSQ
APVFIRGESGVGKERVARLIHAQGARASGPFVPVNCGAIPEHLLESELFGHVKGSFTGASADREGLFQTAAGGTLFLDEI
GAVPPAMQVKLLRALQERAVRPVGARQEIPVDARVLSATHEDLAALVRDGRVRQDFYYRINVIEVTVPPLRDRAQDIPAL
AADLLARMAGGERLELTPAALTALQGYAFPGNVRELENILERAAALCEGPQIDRADLHLPAACEYPPQGGAGGDDLDAEL
DGVERARIVAALEATRYNRTAAAARLGLTLRQLRYRMLKLDLN

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=173189 PG2T_RS07640 WP_068803934.1 1604708..1606039(+) (pilR) [Immundisolibacter cernigliae strain TR3.2]
ATGAACGCCCTTCCCGAAGACGCGCCGCGCGTGCTGATCGTCGACGACGAGCCGGACCTGTGCGAGCTGCTGGCCATCAC
CCTGCGCGGCATGGGCCTGCAAAGCGACAGCACCGGCACCCTGGTCGCCGCCAGGCAGGCCCTGACCGACGCCAGCTACC
GCCTGTGCCTGTGCGACCTGCGCCTGCCCGACGGCAGCGGCCTCGAGTTGATCGAGCACATCCAGCGCACGCAGCCGCAC
CTGCCGGTGGCCATGATCACCGCCCACGGCGATGTCGGTGCGGCGGTGGCGGCCATGAAGGCCGGTGCGTTTGATTTCGT
CAACAAGCCGGTCAACGTGCAGGGCCTGCGGGGCCTGATCGATCAGGCGCTGCGGCTGTCGCGGGTGCGGGCCGAGGCCG
GCACCGTGCCAAGCCTGATCGGCGAATCGCCGGCCATGCAGGCGCTGCGGGTCATGGTCGCCAAGCTCGCGCGTAGCCAG
GCGCCGGTGTTCATCCGCGGCGAGTCGGGCGTCGGCAAGGAGCGCGTGGCGCGCTTGATTCACGCCCAGGGCGCGCGCGC
CAGCGGACCGTTCGTGCCGGTCAACTGCGGCGCCATTCCGGAACATCTGCTGGAAAGCGAGCTGTTCGGGCACGTCAAGG
GCAGCTTCACCGGCGCCAGCGCCGACCGCGAGGGCCTGTTCCAGACCGCCGCCGGCGGCACGCTGTTCCTGGACGAAATC
GGTGCCGTGCCGCCGGCCATGCAGGTCAAGCTGCTGCGGGCGCTGCAGGAGCGGGCCGTGCGCCCGGTCGGTGCGCGTCA
GGAAATACCGGTCGATGCGCGTGTGCTCAGCGCCACGCATGAGGATCTGGCCGCCCTGGTGCGTGACGGGCGCGTACGCC
AGGACTTCTACTACCGCATCAACGTCATCGAAGTCACCGTGCCGCCGCTGCGCGACCGGGCGCAGGACATCCCGGCGCTG
GCGGCCGATCTGCTGGCGCGCATGGCCGGCGGCGAGCGGCTGGAGCTGACGCCCGCTGCCTTGACGGCCCTGCAGGGCTA
TGCCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTGGAGCGTGCCGCCGCGCTGTGCGAGGGGCCGCAGATCGACC
GCGCCGACCTGCACCTGCCGGCCGCCTGCGAGTACCCGCCGCAGGGAGGCGCCGGCGGTGACGATCTGGACGCCGAACTG
GACGGCGTCGAGCGCGCCCGCATCGTGGCGGCGCTGGAAGCCACCCGCTACAACCGCACCGCCGCCGCCGCGCGCCTGGG
CCTGACCCTGCGCCAGTTGCGCTACCGCATGCTCAAGCTGGACTTGAACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-439)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B1YTL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.277

99.549

0.58
  pilR Acinetobacter baumannii strain A118

47.009

100

0.497

Multiple sequence alignment