Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   BSF20_RS00785 Genome accession   NZ_CP018152
Coordinates   142062..142733 (-) Length   223 a.a.
NCBI ID   WP_003154900.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 137062..147733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS20015 - 137133..137267 (-) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  BSF20_RS00755 (BSF20_00740) rapC 137257..138393 (-) 1137 WP_155759822.1 tetratricopeptide repeat protein Regulator
  BSF20_RS00760 (BSF20_00745) - 138598..139065 (+) 468 WP_044053119.1 DinB family protein -
  BSF20_RS00765 (BSF20_00750) - 139214..139978 (+) 765 WP_014304837.1 sulfite exporter TauE/SafE family protein -
  BSF20_RS00770 (BSF20_00755) - 140054..140245 (-) 192 WP_014304836.1 hypothetical protein -
  BSF20_RS00775 (BSF20_00760) - 140405..140587 (-) 183 Protein_163 ATP-binding cassette domain-containing protein -
  BSF20_RS00780 (BSF20_00765) - 140707..142065 (-) 1359 WP_003154898.1 sensor histidine kinase -
  BSF20_RS00785 (BSF20_00770) scnR 142062..142733 (-) 672 WP_003154900.1 response regulator transcription factor Regulator
  BSF20_RS00790 (BSF20_00775) - 142917..144410 (-) 1494 WP_072588218.1 UxaA family hydrolase -
  BSF20_RS00795 (BSF20_00780) - 144407..145852 (-) 1446 WP_072588219.1 tagaturonate reductase -
  BSF20_RS00800 (BSF20_00785) - 145926..146924 (-) 999 WP_003154904.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26422.68 Da        Isoelectric Point: 6.5038

>NTDB_id=173170 BSF20_RS00785 WP_003154900.1 142062..142733(-) (scnR) [Bacillus amyloliquefaciens strain LM2303]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=173170 BSF20_RS00785 WP_003154900.1 142062..142733(-) (scnR) [Bacillus amyloliquefaciens strain LM2303]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363