Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSF20_RS00755 Genome accession   NZ_CP018152
Coordinates   137257..138393 (-) Length   378 a.a.
NCBI ID   WP_155759822.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 132257..143393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS00720 (BSF20_00705) - 132487..133314 (-) 828 WP_014304841.1 FaeA/PapI family transcriptional regulator -
  BSF20_RS00725 (BSF20_00710) - 133304..133483 (-) 180 WP_003154869.1 hypothetical protein -
  BSF20_RS00730 (BSF20_00715) xre 133675..134013 (+) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  BSF20_RS00735 (BSF20_00720) - 134162..134752 (+) 591 WP_003154873.1 ImmA/IrrE family metallo-endopeptidase -
  BSF20_RS00740 (BSF20_00725) - 134907..135512 (-) 606 WP_032858666.1 poly-gamma-glutamate hydrolase family protein -
  BSF20_RS00745 (BSF20_00730) - 135622..135999 (+) 378 WP_003154878.1 PH domain-containing protein -
  BSF20_RS00750 (BSF20_00735) - 136037..136990 (-) 954 WP_003154880.1 N-acetylmuramoyl-L-alanine amidase -
  BSF20_RS20015 - 137133..137267 (-) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  BSF20_RS00755 (BSF20_00740) rapC 137257..138393 (-) 1137 WP_155759822.1 tetratricopeptide repeat protein Regulator
  BSF20_RS00760 (BSF20_00745) - 138598..139065 (+) 468 WP_044053119.1 DinB family protein -
  BSF20_RS00765 (BSF20_00750) - 139214..139978 (+) 765 WP_014304837.1 sulfite exporter TauE/SafE family protein -
  BSF20_RS00770 (BSF20_00755) - 140054..140245 (-) 192 WP_014304836.1 hypothetical protein -
  BSF20_RS00775 (BSF20_00760) - 140405..140587 (-) 183 Protein_163 ATP-binding cassette domain-containing protein -
  BSF20_RS00780 (BSF20_00765) - 140707..142065 (-) 1359 WP_003154898.1 sensor histidine kinase -
  BSF20_RS00785 (BSF20_00770) scnR 142062..142733 (-) 672 WP_003154900.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45013.18 Da        Isoelectric Point: 4.9159

>NTDB_id=173169 BSF20_RS00755 WP_155759822.1 137257..138393(-) (rapC) [Bacillus amyloliquefaciens strain LM2303]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELSVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=173169 BSF20_RS00755 WP_155759822.1 137257..138393(-) (rapC) [Bacillus amyloliquefaciens strain LM2303]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTCTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426