Detailed information NTG0173082

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BOC72_RS11310
• Genome accession: NZ_CP018138
• Coordinates: 2057426..2058523 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain SP64
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2052426..2063523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BOC72_RS11285 (BOC72_02116)	pgsA	2052947..2053492 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BOC72_RS11290 (BOC72_02117)	rodZ	2053503..2054324 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
BOC72_RS11295 (BOC72_02118)	yfmH	2054366..2055649 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BOC72_RS11300 (BOC72_02119)	yfmF	2055646..2056896 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BOC72_RS11305 (BOC72_02120)	yaaA	2057055..2057423 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
BOC72_RS11310 (BOC72_02121)	recF	2057426..2058523 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
BOC72_RS11315 (BOC72_02122)	guaB	2058574..2060052 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
BOC72_RS11320 (BOC72_02123)	trpS	2060204..2061229 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
BOC72_RS11325 (BOC72_02124)	-	2061435..2063057 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=173082 BOC72_RS11310 WP_000266662.1 2057426..2058523(+) (recF) [Streptococcus pneumoniae strain SP64]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=173082 BOC72_RS11310 WP_000266662.1 2057426..2058523(+) (recF) [Streptococcus pneumoniae strain SP64]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46