Detailed information NTG0172967

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: BOC71_RS11295
• Genome accession: NZ_CP018137
• Coordinates: 2056125..2057222 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain SP61
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2051125..2062222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BOC71_RS11270 (BOC71_02115)	pgsA	2051646..2052191 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
BOC71_RS11275 (BOC71_02116)	rodZ	2052202..2053023 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
BOC71_RS11280 (BOC71_02117)	yfmH	2053065..2054348 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
BOC71_RS11285 (BOC71_02118)	yfmF	2054345..2055595 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
BOC71_RS11290 (BOC71_02119)	yaaA	2055754..2056122 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
BOC71_RS11295 (BOC71_02120)	recF	2056125..2057222 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
BOC71_RS11300 (BOC71_02121)	guaB	2057273..2058751 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
BOC71_RS11305 (BOC71_02122)	trpS	2058903..2059928 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
BOC71_RS11310 (BOC71_02123)	-	2060134..2061756 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=172967 BOC71_RS11295 WP_000266662.1 2056125..2057222(+) (recF) [Streptococcus pneumoniae strain SP61]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=172967 BOC71_RS11295 WP_000266662.1 2056125..2057222(+) (recF) [Streptococcus pneumoniae strain SP61]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46