Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VVCECT4999_RS08970 Genome accession   NZ_CP014636
Coordinates   1751213..1752706 (+) Length   497 a.a.
NCBI ID   WP_039448574.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746213..1757706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS08955 (VVCECT4999_08145) - 1747237..1747929 (+) 693 WP_038940811.1 AAA family ATPase -
  VVCECT4999_RS08960 (VVCECT4999_08150) - 1747944..1748744 (+) 801 WP_039448577.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  VVCECT4999_RS08965 (VVCECT4999_08155) - 1748768..1751056 (+) 2289 WP_039448575.1 ATP-binding protein -
  VVCECT4999_RS08970 (VVCECT4999_08160) luxO 1751213..1752706 (+) 1494 WP_039448574.1 sigma-54-dependent transcriptional regulator Regulator
  VVCECT4999_RS08975 (VVCECT4999_08165) - 1752699..1753832 (+) 1134 WP_039448572.1 glycosyltransferase -
  VVCECT4999_RS08980 (VVCECT4999_08170) - 1753940..1755133 (+) 1194 WP_039448569.1 glycosyltransferase family 4 protein -
  VVCECT4999_RS08985 (VVCECT4999_08175) - 1755130..1756308 (+) 1179 WP_039448568.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55788.88 Da        Isoelectric Point: 6.6070

>NTDB_id=172861 VVCECT4999_RS08970 WP_039448574.1 1751213..1752706(+) (luxO) [Vibrio vulnificus strain CECT 4999]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDVPTAVIIA
TAHGSVDIAVSLMNKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENIQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKDQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEIKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIEMPPLRERSNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNMEHLPAQLTTKPQTVKEPAKL
STPPQPVQAVIQEMRNGHEALNHHSLETQTSKANPLAHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=172861 VVCECT4999_RS08970 WP_039448574.1 1751213..1752706(+) (luxO) [Vibrio vulnificus strain CECT 4999]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTCAAAGATGAACCCTA
TGACATTTTTCACGTGGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACACCGCAGCTGGTGATTTTAGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTTGACTGGATCAACCAAAACGATGTTCCGACCGCGGTTATCATTGCC
ACCGCTCATGGTTCCGTCGACATCGCCGTCAGCTTAATGAACAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTAAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAATTAGAGCATTTAGTTGAGAACATACAGTCTCGCT
TCGACAGACCACGTTATCACGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCAGTATATAAAACCATTGATTCAGTGGCG
CCAACCACCGCCAGTGTTTTTATCAACGGAGAAAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATACACAAACAGAG
TCTGCGCAAAGACCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACCGGAGCGACAACCGATCGCAAAGGTGCAGCAATGCTGGCCAACGGCGGCACGCTATTTCTC
GATGAATTGTGCGAGATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACCGGCACCTTCACCCCACTCGG
CGGCAGTAAAGAAATCAAAGTGGATGTACGCATCATCTGCGCCACCAATCGCGATCCCCTCAAAGAGGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCAATTGAAATGCCACCACTGAGAGAACGAAGTAACGACATC
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAGGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCGCA
ATCAATACTAAAAAAATACAACTGGCCGGGCAATGTCCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATATGGAACATTTGCCGGCTCAACTCACCACCAAACCGCAAACCGTCAAAGAACCCGCAAAACTC
TCAACACCACCTCAACCCGTTCAAGCGGTCATCCAAGAGATGCGCAACGGACATGAGGCGTTAAACCATCATTCGCTTGA
GACGCAAACATCCAAGGCCAATCCACTCGCTCACAATGCGTTTCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TTGAACGCGAAGCGATTCAAAACGCCATCGCCTTTTGCGACGGCAACGTGATCAGTGCGGCGGTGATGTTGGAGCTAAGC
CCTTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

51.235

97.787

0.501
  pilR Acinetobacter baumannii strain A118

36.81

98.39

0.362

Multiple sequence alignment