Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   VVCECT4999_RS02975 Genome accession   NZ_CP014636
Coordinates   590408..591400 (+) Length   330 a.a.
NCBI ID   WP_017420278.1    Uniprot ID   -
Organism   Vibrio vulnificus strain CECT 4999     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 585408..596400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VVCECT4999_RS02940 (VVCECT4999_02905) ftsB 585439..585720 (+) 282 WP_017420271.1 cell division protein FtsB -
  VVCECT4999_RS02945 (VVCECT4999_02910) ispD 585720..586433 (+) 714 WP_017420272.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  VVCECT4999_RS02950 (VVCECT4999_02915) ispF 586430..586906 (+) 477 WP_017420273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  VVCECT4999_RS02955 (VVCECT4999_02920) truD 586942..587985 (+) 1044 WP_039448950.1 tRNA pseudouridine(13) synthase TruD -
  VVCECT4999_RS02960 (VVCECT4999_02925) surE 587991..588758 (+) 768 WP_017420275.1 5'/3'-nucleotidase SurE -
  VVCECT4999_RS02965 (VVCECT4999_02930) - 588761..589387 (+) 627 WP_017420276.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  VVCECT4999_RS02970 (VVCECT4999_02935) - 589431..590327 (+) 897 WP_039448955.1 peptidoglycan DD-metalloendopeptidase family protein -
  VVCECT4999_RS02975 (VVCECT4999_02940) rpoS 590408..591400 (+) 993 WP_017420278.1 RNA polymerase sigma factor RpoS Regulator
  VVCECT4999_RS02980 (VVCECT4999_02945) mutS 591476..594037 (-) 2562 WP_038941441.1 DNA mismatch repair protein MutS -
  VVCECT4999_RS02985 (VVCECT4999_02950) pncC 594121..594624 (+) 504 WP_017420280.1 nicotinamide-nucleotide amidase -
  VVCECT4999_RS02990 (VVCECT4999_02955) recA 594757..595806 (+) 1050 WP_039448947.1 recombinase RecA Machinery gene
  VVCECT4999_RS02995 (VVCECT4999_02960) recX 595916..596377 (+) 462 WP_038941439.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 38011.07 Da        Isoelectric Point: 4.4761

>NTDB_id=172850 VVCECT4999_RS02975 WP_017420278.1 590408..591400(+) (rpoS) [Vibrio vulnificus strain CECT 4999]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide


Download         Length: 993 bp        

>NTDB_id=172850 VVCECT4999_RS02975 WP_017420278.1 590408..591400(+) (rpoS) [Vibrio vulnificus strain CECT 4999]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTTGAGAAATTCGATCCTG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGTCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTTGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTAGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(91-160)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(53-86)

Sigma-70 region 3 (Sigma70_r3)

(171-244)

Sigma-70, region 4 (Sigma70_r4)

(259-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.602

100

0.833

Multiple sequence alignment