Detailed information NTG0172402

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: A2U21_RS09720
• Genome accession: NZ_CP018034
• Coordinates: 1902761..1903477 (-)
• Length: 238 a.a.
• NCBI ID: WP_005713175.1
• Uniprot ID: -
• Organism: Glaesserella parasuis str. Nagasaki
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1897761..1908477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A2U21_RS09680 (A2U21_09385)	-	1897860..1898147 (-)	288	WP_005713186.1	co-chaperone GroES	-
A2U21_RS12845	-	1898355..1898417 (-)	63	Protein_1881	RNA-guided endonuclease TnpB family protein	-
A2U21_RS09690 (A2U21_09390)	qseC	1898539..1899939 (-)	1401	WP_005713184.1	quorum sensing histidine kinase QseC	-
A2U21_RS09695 (A2U21_09395)	ciaR	1899926..1900597 (-)	672	WP_021110353.1	response regulator	Regulator
A2U21_RS09700 (A2U21_09400)	-	1900658..1901023 (-)	366	WP_021110352.1	YgiW/YdeI family stress tolerance OB fold protein	-
A2U21_RS09705 (A2U21_09405)	-	1901192..1902112 (-)	921	WP_080691034.1	TonB-dependent receptor domain-containing protein	-
A2U21_RS09710 (A2U21_09410)	rpmG	1902217..1902387 (-)	171	WP_005624479.1	50S ribosomal protein L33	-
A2U21_RS09715 (A2U21_09415)	rpmB	1902399..1902635 (-)	237	WP_006251446.1	50S ribosomal protein L28	-
A2U21_RS09720 (A2U21_09420)	radC	1902761..1903477 (-)	717	WP_005713175.1	RadC family protein	Machinery gene
A2U21_RS09725 (A2U21_09425)	coaBC	1903647..1904849 (+)	1203	WP_021110350.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
A2U21_RS09730 (A2U21_09430)	-	1904859..1905185 (+)	327	WP_005713172.1	hypothetical protein	-
A2U21_RS09735 (A2U21_09435)	dut	1905211..1905666 (+)	456	WP_021110349.1	dUTP diphosphatase	-
A2U21_RS09740 (A2U21_09440)	slmA	1905675..1906280 (+)	606	WP_005713169.1	nucleoid occlusion factor SlmA	-
A2U21_RS09745 (A2U21_09445)	-	1906288..1906512 (+)	225	WP_005713165.1	YheU family protein	-
A2U21_RS09750 (A2U21_09450)	crp	1906579..1907253 (+)	675	WP_010787261.1	cAMP-activated global transcriptional regulator CRP	Regulator
A2U21_RS09755 (A2U21_09455)	-	1907508..1907759 (+)	252	WP_223300025.1	hypothetical protein	-
A2U21_RS12265 (A2U21_09460)	-	1907798..1907944 (+)	147	WP_021110348.1	hypothetical protein	-

Sequence

Protein

• Length: 238 a.a.
• Molecular weight: 27139.26 Da
• Isoelectric Point: 4.7438

>NTDB_id=172402 A2U21_RS09720 WP_005713175.1 1902761..1903477(-) (radC) [Glaesserella parasuis str. Nagasaki]
MNESSSELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENSEFSPCLDELKQV

Nucleotide

• Length: 717 bp

>NTDB_id=172402 A2U21_RS09720 WP_005713175.1 1902761..1903477(-) (radC) [Glaesserella parasuis str. Nagasaki]
ATGAATGAAAGTTCTAGTGAATTAATGCCAAGAGAAAAATTGCTGAAATTTGGTGCTGAAGCCTTAAGTGATGCTGAGCT
ATTGGCAATCTTTTTACGTACAGGAATTAAAGGGATACCCGTGATGGATCTATCGGAAAGCGTACTCACTGCCTTTGGTT
CATTACGGGGATTGCTGTCAGCAACATTAGAAGATTTCTGTAAAATCAAAGGATTAGGACAAATTCAGTATATTCAACTT
CAGGCAACCAAAGAGATGACGAAACGCTATTTATCGCAACAAATGAAAGTAAATGAAATGGTAGATAGCCCCTATTTAGC
CGTAATGTATTTTCAATCGGAATTGGAATCTTGGGAGCGAGAAGTATTTATGGTGATCTTTTTAGATAACCAAAATAGGT
TGATCAAAACAGAAAAAATGTTTTACGGTACGATCAACCAAGCCTCAGTTCACCCTCGTGAAATCATTAAAGAAGCCTTG
AAGTGTAATGCCGCCGCCATTTTAGTTGCACATAACCACCCATCTGGCAACTGCAATCCAAGTGAGGCAGATCGGTTTTT
GACTCGAAAAATAGAAATGGCGTGTGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAAAAGTTTGAACAAGAAAATAGCGAATTTTCCCCTTGTTTAGATGAACTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (5-77)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	61.111	90.756	0.555