Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AYR69_RS16760 Genome accession   NZ_CP014540
Coordinates   3513304..3514122 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain XH857     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3508304..3519122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR69_RS16745 (AYR69_16745) pilE 3508530..3508955 (-) 426 WP_005127886.1 type IV pilin protein Machinery gene
  AYR69_RS16750 (AYR69_16750) pilY2 3508952..3509434 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AYR69_RS16755 (AYR69_16755) pilY1 3509447..3513292 (-) 3846 WP_025469982.1 PilC/PilY family type IV pilus protein Machinery gene
  AYR69_RS16760 (AYR69_16760) pilX 3513304..3514122 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AYR69_RS16765 (AYR69_16765) pilW 3514119..3515120 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AYR69_RS16770 (AYR69_16770) pilV 3515121..3515681 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AYR69_RS16775 (AYR69_16775) fimU 3515675..3516148 (-) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  AYR69_RS16780 (AYR69_16780) ispH 3516318..3517268 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AYR69_RS16785 (AYR69_16785) gmk 3517391..3518020 (+) 630 WP_000015937.1 guanylate kinase -
  AYR69_RS16790 (AYR69_16790) rpoZ 3518093..3518371 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AYR69_RS19190 - 3518410..3518540 (+) 131 Protein_3294 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=172314 AYR69_RS16760 WP_000149376.1 3513304..3514122(-) (pilX) [Acinetobacter baumannii strain XH857]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=172314 AYR69_RS16760 WP_000149376.1 3513304..3514122(-) (pilX) [Acinetobacter baumannii strain XH857]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment