Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   BAMY_RS08550 Genome accession   NZ_CP017953
Coordinates   1669976..1671853 (+) Length   625 a.a.
NCBI ID   WP_003154106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1664976..1676853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS08535 (BAMY_08340) ymcA 1666027..1666458 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAMY_RS08540 (BAMY_08345) cotE 1666711..1667256 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAMY_RS08545 (BAMY_08350) hexA 1667375..1669960 (+) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene
  BAMY_RS08550 (BAMY_08355) hexB 1669976..1671853 (+) 1878 WP_003154106.1 DNA mismatch repair endonuclease MutL Machinery gene
  BAMY_RS08555 (BAMY_08360) - 1672174..1672383 (-) 210 WP_003154104.1 hypothetical protein -
  BAMY_RS08560 (BAMY_08365) - 1673454..1674131 (+) 678 WP_003154103.1 MBL fold metallo-hydrolase -
  BAMY_RS08565 (BAMY_08370) fabD 1674446..1675315 (+) 870 WP_025851197.1 ACP S-malonyltransferase -
  BAMY_RS08570 (BAMY_08375) - 1675452..1676426 (+) 975 WP_003154101.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70230.35 Da        Isoelectric Point: 5.7702

>NTDB_id=172134 BAMY_RS08550 WP_003154106.1 1669976..1671853(+) (hexB) [Bacillus amyloliquefaciens strain Y14]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKTAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIEEESLPDEAGHG
VPPELGMPVTEAPVSDIPEPEEEADSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=172134 BAMY_RS08550 WP_003154106.1 1669976..1671853(+) (hexB) [Bacillus amyloliquefaciens strain Y14]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTTTCGAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGCAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAGC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACGCCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTCAACCGGATTGCTCTTGCGCATCCGGAAGTATCCATCCG
TCTGCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGTTACATCGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGGTACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAAACAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCGGAGCCGGTCATAGAAGAAGAGTCCCTGCCGGATGAAGCGGGTCACGGA
GTGCCGCCGGAGCTCGGCATGCCGGTAACGGAAGCGCCTGTTTCCGATATTCCGGAGCCTGAAGAGGAGGCTGACTCTGA
AGAAATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACGTATATTTTAGCCCAAAACGAAA
ACGGCTTGTATATCATTGACCAGCATGCGGCGCAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTC
GAGCCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAAGCGCTGATCATTGACCAGCATCA
GCATGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAA
CTCCGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGAGAAACGACGAAATCAA
AGCGCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTTACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGTA
CGTATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAA

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.522

100

0.482