Detailed information NTG0172123

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AZE33_RS21230
• Genome accession: NZ_CP014528
• Coordinates: 363961..364821 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152269.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain XH858
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 358961..369821

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AZE33_RS01665 (AZE33_01665)	-	359853..361163 (+)	1311	WP_020752743.1	tetratricopeptide repeat protein	-
AZE33_RS01670 (AZE33_01670)	-	361240..361566 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AZE33_RS01675 (AZE33_01675)	rlmB	361668..362417 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AZE33_RS01680 (AZE33_01680)	-	362452..363366 (+)	915	WP_000075015.1	DMT family transporter	-
AZE33_RS01685 (AZE33_01685)	coaE	363363..363959 (-)	597	WP_000874124.1	dephospho-CoA kinase	-
AZE33_RS21230 (AZE33_01690)	pilD	363961..364821 (-)	861	WP_001152269.1	prepilin peptidase	Machinery gene
AZE33_RS01695 (AZE33_01695)	pilC	364821..366047 (-)	1227	WP_000279215.1	type II secretion system F family protein	Machinery gene
AZE33_RS01700 (AZE33_01700)	pilB	366077..367789 (-)	1713	WP_001274989.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AZE33_RS01705 (AZE33_01705)	tpiA	368080..368874 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
AZE33_RS01710 (AZE33_01710)	secG	368887..369216 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32029.45 Da
• Isoelectric Point: 6.6663

>NTDB_id=172123 AZE33_RS21230 WP_001152269.1 363961..364821(-) (pilD) [Acinetobacter baumannii strain XH858]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=172123 AZE33_RS21230 WP_001152269.1 363961..364821(-) (pilD) [Acinetobacter baumannii strain XH858]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437