Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AZE33_RS17895 Genome accession   NZ_CP014528
Coordinates   3710335..3710970 (+) Length   211 a.a.
NCBI ID   WP_000472273.1    Uniprot ID   A0A9P3CZD1
Organism   Acinetobacter baumannii strain XH858     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3705335..3715970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZE33_RS17880 (AZE33_17880) adeT2 3706395..3707381 (-) 987 WP_000712911.1 putative multidrug efflux protein AdeT2 -
  AZE33_RS17885 (AZE33_17885) - 3707461..3708276 (-) 816 WP_000547774.1 NAD-dependent epimerase/dehydratase family protein -
  AZE33_RS17890 (AZE33_17890) recG 3708297..3710342 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  AZE33_RS17895 (AZE33_17895) comF 3710335..3710970 (+) 636 WP_000472273.1 ComF family protein Machinery gene
  AZE33_RS17900 (AZE33_17900) - 3710973..3711374 (-) 402 WP_000849705.1 NUDIX hydrolase -
  AZE33_RS17905 (AZE33_17905) - 3711389..3711970 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  AZE33_RS17910 (AZE33_17910) - 3712128..3713141 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  AZE33_RS17915 (AZE33_17915) - 3713211..3713498 (-) 288 WP_000250997.1 STAS domain-containing protein -
  AZE33_RS17920 (AZE33_17920) - 3713510..3714151 (-) 642 WP_001093907.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  AZE33_RS17925 (AZE33_17925) - 3714178..3714858 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AZE33_RS17930 (AZE33_17930) mlaE 3714858..3715634 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24565.69 Da        Isoelectric Point: 9.7140

>NTDB_id=172108 AZE33_RS17895 WP_000472273.1 3710335..3710970(+) (comF) [Acinetobacter baumannii strain XH858]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=172108 AZE33_RS17895 WP_000472273.1 3710335..3710970(+) (comF) [Acinetobacter baumannii strain XH858]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTTGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTCAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

100

100

1
  comF Acinetobacter baumannii D1279779

99.052

100

0.991

Multiple sequence alignment