Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AWV81_RS18900 Genome accession   NZ_CP014471
Coordinates   3522433..3523122 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3517433..3528122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS18865 (AWV81_18855) flgN 3517613..3518095 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AWV81_RS18870 (AWV81_18860) flgM 3518111..3518377 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  AWV81_RS18875 (AWV81_18865) yvyF 3518458..3518877 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  AWV81_RS18880 (AWV81_18870) comFC 3518950..3519672 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  AWV81_RS18885 (AWV81_18875) comFB 3519636..3519932 (-) 297 WP_003227989.1 late competence protein ComFB -
  AWV81_RS18890 (AWV81_18880) comFA 3519992..3521383 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  AWV81_RS18895 (AWV81_18885) fakBA 3521490..3522335 (-) 846 WP_014481053.1 DegV family protein -
  AWV81_RS18900 (AWV81_18890) degU 3522433..3523122 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  AWV81_RS18905 (AWV81_18895) degS 3523205..3524362 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AWV81_RS18910 (AWV81_18900) - 3524579..3525232 (+) 654 WP_014481055.1 YigZ family protein -
  AWV81_RS18915 (AWV81_18905) - 3525232..3526224 (+) 993 WP_014481056.1 LCP family protein -
  AWV81_RS18920 (AWV81_18910) - 3526822..3527286 (+) 465 WP_251988278.1 hypothetical protein -
  AWV81_RS18925 (AWV81_18915) - 3527335..3527790 (+) 456 WP_061113849.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=171756 AWV81_RS18900 WP_014481054.1 3522433..3523122(-) (degU) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=171756 AWV81_RS18900 WP_014481054.1 3522433..3523122(-) (degU) [Bacillus subtilis subsp. natto strain CGMCC 2108]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment