Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AWV81_RS18880 Genome accession   NZ_CP014471
Coordinates   3518950..3519672 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. natto strain CGMCC 2108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3513950..3524672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWV81_RS18845 (AWV81_18835) fliW 3514090..3514521 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  AWV81_RS18850 (AWV81_18840) yviE 3514542..3515117 (-) 576 WP_014481045.1 DUF6470 family protein -
  AWV81_RS18855 (AWV81_18845) flgL 3515164..3516060 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  AWV81_RS18860 (AWV81_18850) flgK 3516071..3517594 (-) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -
  AWV81_RS18865 (AWV81_18855) flgN 3517613..3518095 (-) 483 WP_014481048.1 flagellar protein FlgN -
  AWV81_RS18870 (AWV81_18860) flgM 3518111..3518377 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  AWV81_RS18875 (AWV81_18865) yvyF 3518458..3518877 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  AWV81_RS18880 (AWV81_18870) comFC 3518950..3519672 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  AWV81_RS18885 (AWV81_18875) comFB 3519636..3519932 (-) 297 WP_003227989.1 late competence protein ComFB -
  AWV81_RS18890 (AWV81_18880) comFA 3519992..3521383 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  AWV81_RS18895 (AWV81_18885) fakBA 3521490..3522335 (-) 846 WP_014481053.1 DegV family protein -
  AWV81_RS18900 (AWV81_18890) degU 3522433..3523122 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  AWV81_RS18905 (AWV81_18895) degS 3523205..3524362 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=171754 AWV81_RS18880 WP_014481051.1 3518950..3519672(-) (comFC) [Bacillus subtilis subsp. natto strain CGMCC 2108]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=171754 AWV81_RS18880 WP_014481051.1 3518950..3519672(-) (comFC) [Bacillus subtilis subsp. natto strain CGMCC 2108]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment