Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BKP58_RS17230 Genome accession   NZ_CP017763
Coordinates   3204864..3205499 (+) Length   211 a.a.
NCBI ID   WP_014480830.1    Uniprot ID   -
Organism   Bacillus subtilis strain 29R7-12     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3199864..3210499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKP58_RS17205 (BKP58_17150) liaI 3200991..3201371 (+) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -
  BKP58_RS17210 (BKP58_17155) liaH 3201398..3202075 (+) 678 WP_014480834.1 stress responsive protein LiaH -
  BKP58_RS17215 (BKP58_17160) liaG 3202176..3203048 (+) 873 WP_014480833.1 DUF4097 domain-containing protein -
  BKP58_RS17220 (BKP58_17165) liaF 3203082..3203807 (+) 726 WP_014480832.1 LiaRS two-component regulatory system accessory protein LiaF -
  BKP58_RS17225 (BKP58_17170) liaS 3203804..3204886 (+) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  BKP58_RS17230 (BKP58_17175) vraR 3204864..3205499 (+) 636 WP_014480830.1 two-component system response regulator LiaR Regulator
  BKP58_RS17235 (BKP58_17180) gerAC 3205507..3206622 (-) 1116 WP_014480829.1 spore germination receptor protein GerAC -
  BKP58_RS17240 (BKP58_17185) gerAB 3206619..3207716 (-) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  BKP58_RS17245 (BKP58_17190) gerAA 3207685..3209133 (-) 1449 WP_014480827.1 spore germination receptor protein GerAA -
  BKP58_RS17250 (BKP58_17195) yvzF 3209252..3209437 (+) 186 WP_014480826.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23197.79 Da        Isoelectric Point: 4.9049

>NTDB_id=171353 BKP58_RS17230 WP_014480830.1 3204864..3205499(+) (vraR) [Bacillus subtilis strain 29R7-12]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=171353 BKP58_RS17230 WP_014480830.1 3204864..3205499(+) (vraR) [Bacillus subtilis strain 29R7-12]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398

Multiple sequence alignment