Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BKN48_RS15115 Genome accession   NZ_CP017676
Coordinates   2888382..2889029 (+) Length   215 a.a.
NCBI ID   WP_070548747.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883382..2894029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS15100 (BKN48_15100) glpD 2883553..2885220 (+) 1668 WP_021479678.1 glycerol-3-phosphate dehydrogenase -
  BKN48_RS15105 (BKN48_15105) pgcA 2885352..2887097 (+) 1746 WP_070548746.1 phosphoglucomutase -
  BKN48_RS15110 (BKN48_15110) yhcY 2887246..2888385 (+) 1140 WP_003245750.1 two-component system sensor histidine kinase YhcY -
  BKN48_RS15115 (BKN48_15115) vraR 2888382..2889029 (+) 648 WP_070548747.1 two-component system response regulator YhcZ Regulator
  BKN48_RS15120 (BKN48_15120) yhdA 2889026..2889550 (+) 525 WP_070548748.1 FMN-dependent NADPH-azoreductase -
  BKN48_RS15125 (BKN48_15125) yhdB 2889565..2889807 (-) 243 WP_003233373.1 YhdB family protein -
  BKN48_RS15130 (BKN48_15130) yhdC 2890008..2890331 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  BKN48_RS15135 (BKN48_15135) lytF 2890373..2891833 (-) 1461 WP_070548749.1 peptidoglycan endopeptidase LytF -
  BKN48_RS15140 (BKN48_15140) nsrR 2891987..2892427 (-) 441 WP_014476271.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24176.84 Da        Isoelectric Point: 6.5030

>NTDB_id=170660 BKN48_RS15115 WP_070548747.1 2888382..2889029(+) (vraR) [Bacillus subtilis strain VV2]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSKAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=170660 BKN48_RS15115 WP_070548747.1 2888382..2889029(+) (vraR) [Bacillus subtilis strain VV2]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTAAAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395