Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   BKN48_RS05905 Genome accession   NZ_CP017676
Coordinates   1083484..1084119 (-) Length   211 a.a.
NCBI ID   WP_070547742.1    Uniprot ID   -
Organism   Bacillus subtilis strain VV2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078484..1089119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKN48_RS05885 (BKN48_05885) yvzF 1079541..1079726 (-) 186 WP_003221676.1 YvzF family protein -
  BKN48_RS05890 (BKN48_05890) gerAA 1079844..1081292 (+) 1449 WP_070547741.1 spore germination receptor protein GerAA -
  BKN48_RS05895 (BKN48_05895) gerAB 1081261..1082358 (+) 1098 WP_021480573.1 spore germination receptor protein GerAB -
  BKN48_RS05900 (BKN48_05900) gerAC 1082355..1083476 (+) 1122 WP_021480574.1 spore germination receptor protein GerAC -
  BKN48_RS05905 (BKN48_05905) vraR 1083484..1084119 (-) 636 WP_070547742.1 two-component system response regulator LiaR Regulator
  BKN48_RS05910 (BKN48_05910) liaS 1084097..1085179 (-) 1083 WP_070547743.1 two-component system sensor histidine kinase LiaS -
  BKN48_RS05915 (BKN48_05915) liaF 1085176..1085901 (-) 726 WP_015714682.1 LiaRS two-component regulatory system accessory protein LiaF -
  BKN48_RS05920 (BKN48_05920) liaG 1085935..1086807 (-) 873 WP_070547744.1 DUF4097 domain-containing protein -
  BKN48_RS05925 (BKN48_05925) liaH 1086908..1087585 (-) 678 WP_070547745.1 stress responsive protein LiaH -
  BKN48_RS05930 (BKN48_05930) liaI 1087612..1087992 (-) 381 WP_070547746.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23126.77 Da        Isoelectric Point: 4.8996

>NTDB_id=170607 BKN48_RS05905 WP_070547742.1 1083484..1084119(-) (vraR) [Bacillus subtilis strain VV2]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMDGMDGIEATKQICWELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=170607 BKN48_RS05905 WP_070547742.1 1083484..1084119(-) (vraR) [Bacillus subtilis strain VV2]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCGGATGTCATTTTAATGG
ACCTTGTTATGGATGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCTGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTGACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCGCATCGAAATCATCTCGTCAAATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.408