Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | GS3922_RS03980 | Genome accession | NZ_CP014342 |
| Coordinates | 820480..820776 (+) | Length | 98 a.a. |
| NCBI ID | WP_082816525.1 | Uniprot ID | - |
| Organism | Geobacillus subterraneus strain KCTC3922(T) | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 815480..825776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GS3922_RS03955 (GS3922_03955) | - | 815855..816982 (+) | 1128 | WP_063165281.1 | class I SAM-dependent methyltransferase | - |
| GS3922_RS03960 (GS3922_03960) | - | 817013..817255 (-) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GS3922_RS03965 (GS3922_03965) | - | 817417..818115 (-) | 699 | WP_063165282.1 | helix-turn-helix transcriptional regulator | - |
| GS3922_RS03970 (GS3922_03970) | comGA | 818316..819386 (+) | 1071 | WP_063165283.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GS3922_RS03975 (GS3922_03975) | comGB | 819383..820411 (+) | 1029 | WP_063165284.1 | competence type IV pilus assembly protein ComGB | - |
| GS3922_RS03980 (GS3922_03980) | comGC | 820480..820776 (+) | 297 | WP_082816525.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GS3922_RS03985 (GS3922_03985) | comGD | 820760..821203 (+) | 444 | WP_225995614.1 | competence type IV pilus minor pilin ComGD | - |
| GS3922_RS03990 (GS3922_03990) | - | 821187..821513 (+) | 327 | WP_063165285.1 | hypothetical protein | - |
| GS3922_RS03995 (GS3922_03995) | comGF | 821492..821935 (+) | 444 | WP_008879847.1 | competence type IV pilus minor pilin ComGF | - |
| GS3922_RS04000 (GS3922_04000) | comGG | 822070..822459 (+) | 390 | WP_063165286.1 | competence type IV pilus minor pilin ComGG | - |
| GS3922_RS04005 (GS3922_04005) | - | 822505..822684 (+) | 180 | WP_063165287.1 | YqzE family protein | - |
| GS3922_RS04010 (GS3922_04010) | - | 822760..823554 (-) | 795 | WP_063165288.1 | YqhG family protein | - |
| GS3922_RS04015 (GS3922_04015) | - | 823541..825205 (-) | 1665 | WP_063165289.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10826.59 Da Isoelectric Point: 5.0629
>NTDB_id=170507 GS3922_RS03980 WP_082816525.1 820480..820776(+) (comGC) [Geobacillus subterraneus strain KCTC3922(T)]
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINTKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLDGRYIKSDKCP
NGHAIEINENGDVSEVGS
MNEKGFTLIEMLIVLMVISVLLLVAIPNITKHNGMINTKGCEAFLNTVQAQVKAYEMEHNKIPTVQELLDGRYIKSDKCP
NGHAIEINENGDVSEVGS
Nucleotide
Download Length: 297 bp
>NTDB_id=170507 GS3922_RS03980 WP_082816525.1 820480..820776(+) (comGC) [Geobacillus subterraneus strain KCTC3922(T)]
GTGAACGAAAAAGGGTTTACCCTCATTGAAATGCTCATTGTGCTAATGGTCATTTCCGTGCTGCTGTTAGTGGCGATTCC
GAACATCACGAAGCATAACGGCATGATTAACACCAAAGGATGCGAGGCATTTTTGAACACAGTGCAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTGCAGGAATTGCTTGATGGCCGCTATATTAAATCGGACAAATGTCCG
AACGGTCACGCGATCGAAATCAATGAGAACGGCGATGTGAGTGAAGTTGGCTCGTAA
GTGAACGAAAAAGGGTTTACCCTCATTGAAATGCTCATTGTGCTAATGGTCATTTCCGTGCTGCTGTTAGTGGCGATTCC
GAACATCACGAAGCATAACGGCATGATTAACACCAAAGGATGCGAGGCATTTTTGAACACAGTGCAGGCGCAAGTGAAGG
CATATGAGATGGAGCATAACAAAATTCCAACCGTGCAGGAATTGCTTGATGGCCGCTATATTAAATCGGACAAATGTCCG
AACGGTCACGCGATCGAAATCAATGAGAACGGCGATGTGAGTGAAGTTGGCTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
55.172 |
88.776 |
0.49 |
| comGC | Staphylococcus aureus MW2 |
40.86 |
94.898 |
0.388 |
| comGC | Staphylococcus aureus N315 |
40.86 |
94.898 |
0.388 |