Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BKM66_RS10220 Genome accession   NZ_CP017666
Coordinates   2117585..2118679 (+) Length   364 a.a.
NCBI ID   WP_105183994.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2112585..2123679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS10195 (BKM66_09940) pgsA 2113097..2113636 (-) 540 WP_014638849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BKM66_RS10200 (BKM66_09945) rodZ 2113656..2114510 (-) 855 WP_024384291.1 cytoskeleton protein RodZ -
  BKM66_RS10205 (BKM66_09950) - 2114592..2115875 (-) 1284 WP_014638851.1 pitrilysin family protein -
  BKM66_RS10210 (BKM66_09955) - 2115872..2117125 (-) 1254 WP_024407757.1 pitrilysin family protein -
  BKM66_RS10215 (BKM66_09960) - 2117199..2117582 (+) 384 WP_044683086.1 RNA-binding S4 domain-containing protein -
  BKM66_RS10220 (BKM66_09965) recF 2117585..2118679 (+) 1095 WP_105183994.1 DNA replication/repair protein RecF Machinery gene
  BKM66_RS10225 (BKM66_09970) guaB 2118750..2120231 (-) 1482 WP_044683088.1 IMP dehydrogenase -
  BKM66_RS10230 (BKM66_09975) trpS 2120463..2121488 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  BKM66_RS10235 (BKM66_09980) - 2121843..2122715 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42236.43 Da        Isoelectric Point: 7.4360

>NTDB_id=170382 BKM66_RS10220 WP_105183994.1 2117585..2118679(+) (recF) [Streptococcus suis strain 0061]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYALALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQDISDKREELTIEYQSSIKFTTSVNLIDIFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDILKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=170382 BKM66_RS10220 WP_105183994.1 2117585..2118679(+) (recF) [Streptococcus suis strain 0061]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGCTTTAGCTTTAACACGAAGCCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGATAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGATATTTCAGATA
AGAGAGAGGAACTAACTATCGAATATCAATCCTCAATTAAGTTTACTACTTCTGTCAATTTAATTGACATATTCTTGACG
GAATTAGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGACAACACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATCG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAGCTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACCTCTTTAGACCATTTACATAAGCTACC
TGATATTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

42.703

100

0.434