Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   BKM66_RS08485 Genome accession   NZ_CP017666
Coordinates   1744682..1745722 (-) Length   346 a.a.
NCBI ID   WP_105183872.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1739682..1750722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS08455 (BKM66_08280) - 1740612..1740920 (-) 309 WP_002942377.1 YlxQ-related RNA-binding protein -
  BKM66_RS08460 (BKM66_08285) - 1740907..1741203 (-) 297 WP_002942375.1 YlxR family protein -
  BKM66_RS08465 (BKM66_08290) nusA 1741220..1742362 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  BKM66_RS08470 (BKM66_08295) rimP 1742435..1742905 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  BKM66_RS08475 (BKM66_08300) trmB 1743203..1743841 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BKM66_RS08480 (BKM66_08305) - 1743838..1744632 (-) 795 WP_029188407.1 phosphotransferase family protein -
  BKM66_RS08485 (BKM66_08310) pptB 1744682..1745722 (-) 1041 WP_105183872.1 ABC transporter permease Regulator
  BKM66_RS08490 (BKM66_08315) pptA 1745719..1746453 (-) 735 WP_105183873.1 ABC transporter ATP-binding protein Regulator
  BKM66_RS08495 (BKM66_08320) - 1746516..1746929 (+) 414 WP_014638608.1 HIT family protein -
  BKM66_RS08500 (BKM66_08325) - 1746931..1747233 (+) 303 WP_024383569.1 hypothetical protein -
  BKM66_RS08505 (BKM66_08330) - 1747703..1748896 (-) 1194 WP_024379502.1 LCP family protein -
  BKM66_RS08510 (BKM66_08335) - 1748893..1749420 (-) 528 WP_105183874.1 GNAT family N-acetyltransferase -
  BKM66_RS08515 (BKM66_08340) tsaE 1749413..1749853 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 40093.45 Da        Isoelectric Point: 10.1579

>NTDB_id=170368 BKM66_RS08485 WP_105183872.1 1744682..1745722(-) (pptB) [Streptococcus suis strain 0061]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVLVVIAISLLVLLSGRIATYLEE
ADQIFLLTKEKDIMQGLEVAARRTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLGLKCLFVKRQLAAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLAIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQFVTQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=170368 BKM66_RS08485 WP_105183872.1 1744682..1745722(-) (pptB) [Streptococcus suis strain 0061]
ATGAAGGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCATTCCCTGAGAATC
CGTTGCCGATTGTTTTGGTGGTTATTGCAATCAGTCTACTGGTGCTATTGTCCGGAAGAATTGCGACTTATTTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTATGCAAGGACTCGAGGTTGCAGCCAGACGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGGTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGCGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTGCGTTTCTTTGCCTTATTTACGACGGT
TAAAGGCATCAGCACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTTGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGGCGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTCCAGTTGTT
GGGGCTTTACAAGCACTATGATTATCAATTTGTAACACAACTGTATCCTTTGGAGAAAGATTCCAAGAAAATCGGTCTTC
AGAATTTGCTTAGAGTGATTTTATACAGTCTATTACTGGTAGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

46.023

100

0.468

  pptB Streptococcus thermophilus LMD-9

45.17

100

0.46