Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   BKM66_RS07025 Genome accession   NZ_CP017666
Coordinates   1429369..1429965 (-) Length   198 a.a.
NCBI ID   WP_105184260.1    Uniprot ID   -
Organism   Streptococcus suis strain 0061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1424369..1434965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM66_RS07005 (BKM66_06830) - 1425980..1426648 (-) 669 WP_105119121.1 ABC transporter ATP-binding protein -
  BKM66_RS07010 (BKM66_06835) - 1426658..1427734 (-) 1077 WP_105119122.1 ABC transporter permease -
  BKM66_RS07015 (BKM66_06840) - 1427737..1428114 (-) 378 WP_105119123.1 OsmC family protein -
  BKM66_RS07020 (BKM66_06845) - 1428218..1429264 (-) 1047 WP_105142738.1 D-alanine--D-alanine ligase -
  BKM66_RS07025 (BKM66_06850) recR 1429369..1429965 (-) 597 WP_105184260.1 recombination mediator RecR Machinery gene
  BKM66_RS07030 (BKM66_06855) pbp2b 1429974..1432043 (-) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  BKM66_RS07035 (BKM66_06860) vga(F) 1432135..1433520 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  BKM66_RS07040 (BKM66_06865) vicX 1433777..1434580 (-) 804 WP_044681030.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21607.71 Da        Isoelectric Point: 4.5456

>NTDB_id=170355 BKM66_RS07025 WP_105184260.1 1429369..1429965(-) (recR) [Streptococcus suis strain 0061]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCGICQDSSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=170355 BKM66_RS07025 WP_105184260.1 1429369..1429965(-) (recR) [Streptococcus suis strain 0061]
ATGCTATATCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCTTGCGGTATTTGTCAAGATAGCAGTCGTGACCAGTCG
ACTATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495