Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AXW78_RS19875 Genome accession   NZ_CP014282
Coordinates   3998565..3999359 (-) Length   264 a.a.
NCBI ID   WP_011110369.1    Uniprot ID   A0A9Q5QPF5
Organism   Bacillus thuringiensis strain Bt185     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3993565..4004359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW78_RS19850 (AXW78_19850) - 3994099..3996171 (-) 2073 WP_000810968.1 sigma-54-dependent Fis family transcriptional regulator -
  AXW78_RS19855 (AXW78_19855) - 3996308..3996541 (+) 234 WP_001190210.1 DUF2627 domain-containing protein -
  AXW78_RS19860 (AXW78_19860) - 3996591..3997319 (-) 729 WP_000172585.1 glycerophosphodiester phosphodiesterase -
  AXW78_RS19865 (AXW78_19865) - 3997370..3997516 (+) 147 WP_000803575.1 YycC family protein -
  AXW78_RS19870 (AXW78_19870) - 3997757..3998312 (-) 556 Protein_3945 PRK06770 family protein -
  AXW78_RS19875 (AXW78_19875) spo0A 3998565..3999359 (-) 795 WP_011110369.1 sporulation transcription factor Spo0A Regulator
  AXW78_RS19880 (AXW78_19880) spoIVB 3999650..4000948 (-) 1299 WP_002164177.1 SpoIVB peptidase -
  AXW78_RS19885 (AXW78_19885) recN 4001067..4002806 (-) 1740 WP_000947761.1 DNA repair protein RecN Machinery gene
  AXW78_RS19890 (AXW78_19890) argR 4003071..4003520 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29415.18 Da        Isoelectric Point: 7.1175

>NTDB_id=170198 AXW78_RS19875 WP_011110369.1 3998565..3999359(-) (spo0A) [Bacillus thuringiensis strain Bt185]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLTDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANAMIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=170198 AXW78_RS19875 WP_011110369.1 3998565..3999359(-) (spo0A) [Bacillus thuringiensis strain Bt185]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAACTAGTATCAATGTTAGAGAGCTATGTAGCCGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAACTTATTAACAGATAAGCAACCTGATGTACTCG
TTTTAGACATTATTATGCCACACTTAGACGGTTTAGCTGTATTGGAAAAAATGCGACATATTGAAAGGTTAAAACAGCCT
AGCGTAATTATGTTGACGGCATTCGGGCAAGAAGATGTGACGAAAAAAGCTGTTGACTTAGGTGCCTCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTGAGTGGTAAAGCAAACGCTATGATTAAACGTCCAC
TACCATCATTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAACTTAGATGCGAGTATTACGAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGATATATGTATTTACGAGAAGCGATTTCCATGGTATACAACGATATCGAATTATT
AGGATCGATTACGAAAGTATTGTATCCAGATATCGCAAAGAAATATAATACGACAGCGAGCCGTGTGGAGCGCGCAATTC
GTCACGCAATTGAAGTAGCGTGGAGCCGTGGGAATATTGATTCTATATCGTCCTTATTTGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATCGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAAGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment