Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   AXE83_RS03315 Genome accession   NZ_CP014264
Coordinates   687485..688717 (+) Length   410 a.a.
NCBI ID   WP_006145154.1    Uniprot ID   A0A1S1GYW6
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 682485..693717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS03295 (AXE83_03295) - 684203..685984 (+) 1782 WP_060955424.1 ABC transporter ATP-binding protein -
  AXE83_RS03300 (AXE83_03300) - 686131..686649 (+) 519 WP_060955425.1 Dps family protein -
  AXE83_RS03305 (AXE83_03305) - 686777..687283 (+) 507 WP_060955426.1 dihydrofolate reductase -
  AXE83_RS03315 (AXE83_03315) clpX 687485..688717 (+) 1233 WP_006145154.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AXE83_RS03320 (AXE83_03320) yihA 688726..689313 (+) 588 WP_006148034.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  AXE83_RS03325 (AXE83_03325) - 689323..689703 (+) 381 WP_001140424.1 RidA family protein -
  AXE83_RS03330 (AXE83_03330) rapZ 689755..690645 (+) 891 WP_060955428.1 RNase adapter RapZ -
  AXE83_RS03335 (AXE83_03335) - 690642..691619 (+) 978 WP_060955429.1 YvcK family protein -
  AXE83_RS03340 (AXE83_03340) whiA 691616..692527 (+) 912 WP_000011302.1 DNA-binding protein WhiA -
  AXE83_RS03345 (AXE83_03345) - 692561..693529 (-) 969 WP_060955430.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45644.18 Da        Isoelectric Point: 4.4806

>NTDB_id=169993 AXE83_RS03315 WP_006145154.1 687485..688717(+) (clpX) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKTVRITKEAVD
GTAKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=169993 AXE83_RS03315 WP_006145154.1 687485..688717(+) (clpX) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAAAAAATAAT
CGCTGGGAACAATGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAGATTATTCGTGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTACCAAAACCAATCGAACTCCTAAACATTTTGAACCACTATGTGATTGGTCAAGATCGT
GCCAAACGTGCTTTGGCAGTTGCTGTATATAACCACTACAAACGCATCAATTTCCATGACACTCGTGAAGAATCAGAAGA
TGTGGATTTGCAAAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCTGGGAAGACTTTCCTTGCTCAAACCCTTGCTA
GAAGTTTGAATGTACCATTTGCTATTGCTGATGCAACAGCCCTTACTGAGGCTGGCTATGTAGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAAGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGAATTATCTACGTGGATGAGATTGA
CAAGATTGCTAAGAAGAGCGAAAATGTCTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTCCTCAAGA
TTATCGAAGGAACTGTAGCTAGCGTACCACCTCAAGGAGGACGTAAACATCCTCAACAAGAAATGATTCAAGTGGATACC
AAGAATATCCTCTTCATTGTGGGTGGGGCCTTTGATGGAATCGAAGAAATTGTCAAACAGCGTCTTGGTGAAAAAGTTAT
CGGTTTCGGACAAAATAACAAGGCTATTGACGAAAACAGCTCATACATGCAAGAAATCATTGCAGAGGACATTCAAAAAT
TCGGTATTATCCCTGAGTTGATTGGGCGCTTGCCTGTCTTTGCAGCTCTGGAGCAATTGACAGTAGATGACTTGGTTCGC
ATTTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAGACCTTGCTTTCTTATGATGATGTTGAGTTAGAATTTGA
CGACGAAGCCCTCCAGGAAATTGCCAATAAAGCAATCGAACGCAAAACTGGTGCACGTGGTCTTCGCTCAATCATCGAAG
AAACTATGCTAGACGTTATGTTTGAAGTTCCAAGTCAAGAAAATGTGAAAACAGTTCGTATCACAAAAGAAGCGGTTGAC
GGAACGGCTAAGCCAATCCTAGAGACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-391)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S1GYW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment