Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AXG94_RS07250 Genome accession   NZ_CP014262
Coordinates   1765477..1767711 (-) Length   744 a.a.
NCBI ID   WP_053190742.1    Uniprot ID   A0A3M3DZU3
Organism   Pseudomonas corrugata strain RM1-1-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1760477..1772711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXG94_RS07215 (AXG94_07205) murB 1760762..1761781 (-) 1020 WP_024776918.1 UDP-N-acetylmuramate dehydrogenase -
  AXG94_RS07220 (AXG94_07210) - 1761778..1762242 (-) 465 WP_024776919.1 low molecular weight protein-tyrosine-phosphatase -
  AXG94_RS07225 (AXG94_07215) kdsB 1762242..1763006 (-) 765 WP_024776920.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AXG94_RS07230 (AXG94_07220) - 1763003..1763188 (-) 186 WP_003179363.1 Trm112 family protein -
  AXG94_RS07235 (AXG94_07225) lpxK 1763212..1764222 (-) 1011 WP_024776921.1 tetraacyldisaccharide 4'-kinase -
  AXG94_RS07240 (AXG94_07230) - 1764222..1764650 (-) 429 WP_024776922.1 ExbD/TolR family protein -
  AXG94_RS07245 (AXG94_07235) exbB 1764647..1765282 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AXG94_RS07250 (AXG94_07240) comA 1765477..1767711 (-) 2235 WP_053190742.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AXG94_RS07255 (AXG94_07245) - 1767857..1768372 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  AXG94_RS07260 (AXG94_07250) - 1768513..1769292 (-) 780 WP_069018299.1 ABC transporter permease -
  AXG94_RS07265 (AXG94_07255) - 1769289..1770221 (-) 933 WP_024776927.1 ABC transporter ATP-binding protein -
  AXG94_RS07270 (AXG94_07260) - 1770355..1770978 (-) 624 WP_055136176.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81357.43 Da        Isoelectric Point: 9.1942

>NTDB_id=169929 AXG94_RS07250 WP_053190742.1 1765477..1767711(-) (comA) [Pseudomonas corrugata strain RM1-1-4]
MRTGWVALALGLVAPVFFPALPPLWLVAALPMLALMVLPFRMYPLGFFLLGLAWACLSAQFALDERLPALLDGETRWVEG
RVTGLPHYSDGVVRFDLVEARSRRTRLPTSMRLAWFGGAPVSSGEHWRLAVKLKRPAGLMNPHGFDHEAWLLSRGIGATG
TVKDGRRLQPAQGAWRDGVRQALAQVDAQGRSGALMALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPGRLPWLPWACALAFFAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFDGVLLFDPL
ASLRPGFWLSFAAVAVLMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTVLLPVPFIGEALLWIAGGLLDLMFEGLALVAGRVPVWVPVPVPLWTWCIAALGAFVLLLPKGVPLRLLGWPMLLLMV
FAPREEVPSGRAHIWQLDVGQGLAVLVRTRHHNLLYDAGPRFGDADVGERVVLPTLRKLGVRKLDLMLLSHADADHAGGA
QAVRNGLATFRVISGDPAALPVALEAEACDSGEHWEWDGVRFEVWQWLSAHESNQKSCVLLVEANGERILLTGDIDTHAE
RALLDGPLAVPTQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRLDMTIYDSAEQGAIRLQL
GAFELPDTQAGHRRYWRDPPAAGP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=169929 AXG94_RS07250 WP_053190742.1 1765477..1767711(-) (comA) [Pseudomonas corrugata strain RM1-1-4]
ATGCGCACAGGGTGGGTCGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTCTTTCCGGCATTGCCGCCGTTGTGGCTGGT
CGCCGCGTTGCCGATGCTGGCGCTGATGGTGCTGCCGTTTCGAATGTATCCGCTGGGTTTTTTCCTGTTGGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTTCGCGCTGGACGAGCGCCTGCCGGCGTTGCTGGATGGCGAAACCCGTTGGGTCGAAGGG
CGTGTCACCGGGTTGCCGCACTACAGTGACGGCGTGGTGCGCTTCGATCTGGTCGAGGCACGATCGCGTCGCACCCGGCT
ACCGACGTCAATGCGTCTGGCCTGGTTCGGGGGGGCACCGGTGAGCAGTGGCGAGCATTGGCGGTTGGCGGTGAAACTGA
AGCGGCCCGCCGGGCTGATGAACCCGCACGGTTTTGACCATGAAGCCTGGTTGCTGAGTCGAGGCATTGGCGCAACCGGT
ACGGTCAAGGATGGTCGTCGTTTGCAACCGGCCCAGGGGGCTTGGCGCGACGGGGTACGCCAGGCACTGGCACAGGTCGA
TGCCCAAGGCCGCTCCGGTGCGCTGATGGCATTGGTCCTGGGCGATGGCGGCGGGTTGAGCCGTGAAGACTGGCAGGTGC
TGCAAGACACCGGCACGGTCCATCTGCTGGTCATTTCCGGACAACACATCGGCTTGCTTGCCGGCCTGGTGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGCGTGTGGCCGGGGCGTCTGCCATGGTTACCGTGGGCCTGTGCCCTGGCCTTCTTCGC
GGCCCTGGGCTACGGCTTGCTTGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCAATGATTGGCCTGGTGCTGCTGT
GGCGCTTGCGCTTCAAACACCCCGATCCCTGGTGGGCGTGGCTGCTGGCTTTCGATGGCGTGCTGCTGTTCGATCCTTTG
GCCAGCCTGCGGCCGGGATTCTGGCTGTCATTTGCCGCAGTCGCGGTACTGATGTTCACCTTCGGCGGGCGCCTGGGACC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGTTGGTGGCAGTCGGATTGTGCCCGTTGTTGCTGATATTGGGCC
TGCCCGTGAGCCTCAGCGGGCCGCTGGTGAATCTTCTGGCGGTGCCCTGGATCAGCCTGCTGGTACTGCCGTCGGCGTTG
CTCGGCACGGTATTGCTGCCGGTGCCGTTCATCGGTGAAGCGCTGCTATGGATCGCCGGGGGGTTGCTCGACCTGATGTT
CGAGGGGCTCGCGCTGGTGGCCGGGCGAGTGCCGGTCTGGGTCCCCGTTCCGGTCCCTCTGTGGACGTGGTGCATCGCAG
CGCTCGGCGCCTTTGTGCTGTTATTGCCCAAGGGCGTGCCGCTGCGTCTACTGGGGTGGCCGATGTTGCTGCTGATGGTG
TTTGCACCACGGGAAGAGGTGCCGTCAGGGCGAGCGCATATCTGGCAACTCGACGTTGGCCAGGGGCTGGCAGTGCTGGT
GCGCACCCGTCACCACAACCTGCTCTATGACGCAGGACCACGTTTCGGCGATGCCGATGTGGGCGAGCGTGTCGTGCTAC
CGACCTTGCGCAAACTGGGAGTGCGGAAGCTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCCGGCGGTGCC
CAGGCCGTGCGTAACGGGCTGGCAACGTTCCGGGTAATCAGCGGCGATCCGGCCGCGTTGCCCGTCGCCCTTGAAGCTGA
GGCCTGCGACAGCGGCGAACATTGGGAATGGGACGGCGTGCGCTTCGAAGTGTGGCAATGGTTGTCGGCCCATGAAAGCA
ACCAGAAATCCTGCGTCTTGCTGGTCGAGGCCAACGGTGAACGGATCCTGTTGACCGGCGACATCGATACCCATGCCGAG
CGCGCGTTGCTCGATGGCCCCCTGGCAGTGCCGACCCAGTGGCTGGCTGCGCCCCACCATGGCAGCCGCAGCTCATCGTC
GATGGCGTTGCTGTCGCGCCTCAAGCCACATTCGGTGTTGATCTCCCGGGGCCAGGGCAACGCGTTTGGCCATCCGCATC
CTCAGGTGATGGCCCGGTATCGACGGTTGGACATGACGATCTACGACAGTGCCGAACAGGGCGCCATTCGTCTGCAACTG
GGGGCCTTCGAGCTGCCGGATACCCAGGCCGGCCACCGGCGCTACTGGCGTGACCCGCCGGCTGCGGGGCCCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M3DZU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.335

96.237

0.581

Multiple sequence alignment