Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AXG94_RS07245 Genome accession   NZ_CP014262
Coordinates   1764647..1765282 (-) Length   211 a.a.
NCBI ID   WP_162164403.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain RM1-1-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1759647..1770282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXG94_RS07210 (AXG94_07200) - 1760026..1760496 (-) 471 WP_024776917.1 (2Fe-2S)-binding protein -
  AXG94_RS07215 (AXG94_07205) murB 1760762..1761781 (-) 1020 WP_024776918.1 UDP-N-acetylmuramate dehydrogenase -
  AXG94_RS07220 (AXG94_07210) - 1761778..1762242 (-) 465 WP_024776919.1 low molecular weight protein-tyrosine-phosphatase -
  AXG94_RS07225 (AXG94_07215) kdsB 1762242..1763006 (-) 765 WP_024776920.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AXG94_RS07230 (AXG94_07220) - 1763003..1763188 (-) 186 WP_003179363.1 Trm112 family protein -
  AXG94_RS07235 (AXG94_07225) lpxK 1763212..1764222 (-) 1011 WP_024776921.1 tetraacyldisaccharide 4'-kinase -
  AXG94_RS07240 (AXG94_07230) - 1764222..1764650 (-) 429 WP_024776922.1 ExbD/TolR family protein -
  AXG94_RS07245 (AXG94_07235) exbB 1764647..1765282 (-) 636 WP_162164403.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AXG94_RS07250 (AXG94_07240) comA 1765477..1767711 (-) 2235 WP_053190742.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AXG94_RS07255 (AXG94_07245) - 1767857..1768372 (+) 516 WP_024776925.1 DUF2062 domain-containing protein -
  AXG94_RS07260 (AXG94_07250) - 1768513..1769292 (-) 780 WP_069018299.1 ABC transporter permease -
  AXG94_RS07265 (AXG94_07255) - 1769289..1770221 (-) 933 WP_024776927.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22798.83 Da        Isoelectric Point: 8.0840

>NTDB_id=169928 AXG94_RS07245 WP_162164403.1 1764647..1765282(-) (exbB) [Pseudomonas corrugata strain RM1-1-4]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRSSSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGVSTNASALAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=169928 AXG94_RS07245 WP_162164403.1 1764647..1765282(-) (exbB) [Pseudomonas corrugata strain RM1-1-4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAACTTAACAAGGACAAGCTCAAGGAGCTGCGGTCCAGTTCGCCATTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATAGAGGAAGCCGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGTACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGATCCGGCGTAAGTACCAATGCCTCGGCGTTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACCGCC
GCGGGCCTGATGGTGGGTATCCCGTCGGTGTTCTTCCATCGGTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment