Detailed information NTG0169732

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: BKD09_RS23575
• Genome accession: NZ_CP017637
• Coordinates: 4859561..4861975 (+)
• Length: 804 a.a.
• NCBI ID: WP_014494656.1
• Uniprot ID: A0ABY3QCX8
• Organism: Bradyrhizobium japonicum strain J5
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4854561..4866975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BKD09_RS23550 (BKD09_23550)	-	4854576..4855301 (+)	726	WP_063982763.1	DnaJ domain-containing protein	-
BKD09_RS23555 (BKD09_23555)	-	4855520..4857370 (-)	1851	WP_071913024.1	D-alanyl-D-alanine carboxypeptidase	-
BKD09_RS23560 (BKD09_23560)	-	4857760..4858098 (+)	339	WP_014494653.1	phasin family protein	-
BKD09_RS23565 (BKD09_23565)	-	4858216..4858467 (-)	252	WP_155795148.1	hypothetical protein	-
BKD09_RS23570 (BKD09_23570)	clpS	4858936..4859268 (+)	333	WP_014494655.1	ATP-dependent Clp protease adapter ClpS	-
BKD09_RS23575 (BKD09_23575)	clpC	4859561..4861975 (+)	2415	WP_014494656.1	ATP-dependent Clp protease ATP-binding subunit ClpA	Regulator
BKD09_RS23580 (BKD09_23580)	ltrA	4862446..4863822 (+)	1377	WP_028144467.1	group II intron reverse transcriptase/maturase	-
BKD09_RS23585 (BKD09_23585)	-	4863923..4864381 (-)	459	WP_071913030.1	PEGA domain-containing protein	-
BKD09_RS23590 (BKD09_23590)	-	4864504..4865925 (-)	1422	WP_071913032.1	MFS transporter	-

Sequence

Protein

• Length: 804 a.a.
• Molecular weight: 88342.70 Da
• Isoelectric Point: 6.8696

>NTDB_id=169732 BKD09_RS23575 WP_014494656.1 4859561..4861975(+) (clpC) [Bradyrhizobium japonicum strain J5]
MPTFSQSLEQSLHRALAIANERHHQYATLEHLLLSLIDDSDAAAVMRACSVDLDKLRTSLVNYLETEFENLVTDGADDAK
PTAGFQRVIQRAVIHVQSSGREEVTGANVLIAIFAERESHAAYFLQEQDMTRYDAVNYISHGIAKRPGVSEARPVRGVDE
ETEAKGTEDAKKKGEALETYCVNLNKKARDGKIDPVIGRNSEINRAIQVLCRRQKNNPLFVGEAGVGKTAIAEGLAKRIV
DSEVPEVLAAATVFSLDMGTLLAGTRYRGDFEERLKQVLKELEAHPNAILFIDEIHTVIGAGATSGGAMDASNLLKPALA
SGTIRCMGSTTYKEYRQHFEKDRALVRRFQKIDINEPTVEDAIAILKGLKPYFEDYHRLKYTNEAIEAAVQLSSRYIHDR
KLPDKAIDVIDESGAAQMLVAENKRKKTIGIKEIETTIASMARIPPKSVSKDDAEVLKHLEQTLKRTVFGQDKAIESLAA
SIKLARAGLREPEKPIGCYLFSGPTGVGKTEVAKQLAASLGVELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDG
VDQHPHCVVLLDEIEKAHPDLYNVLLQIMDHGRLTDHNGKQVNFRNVILIMTTNAGASDLAKQAFGFTRSKREGDDHEAI
NRQFAPEFRNRLDAIVSFGHLSVEVIGTVVEKFVLQLEAQLGDRDVTIELSEPAKTWLVQHGYDEQMGARPMARVIQEHI
KKPLADEVLFGKLKGGGHVRVVLVKDEADETKDKIGFEFLDGPITPKQEKLPGARKRPPGKSKPGGGGSGGSKGPTSKGP
LVKA

Nucleotide

• Length: 2415 bp

>NTDB_id=169732 BKD09_RS23575 WP_014494656.1 4859561..4861975(+) (clpC) [Bradyrhizobium japonicum strain J5]
ATGCCGACTTTTTCCCAAAGCCTTGAACAATCCCTGCATCGTGCGCTGGCGATCGCAAACGAGCGTCATCACCAATACGC
GACGCTCGAGCATCTCTTGCTCTCCCTGATCGACGACTCCGATGCAGCCGCCGTCATGCGAGCCTGTAGCGTCGATCTCG
ACAAGCTCCGCACGAGCCTCGTCAATTACCTTGAAACCGAATTCGAGAATCTGGTGACGGATGGCGCCGACGACGCCAAG
CCGACCGCCGGTTTCCAGCGCGTGATCCAGCGCGCGGTGATCCATGTGCAGTCGTCCGGTCGCGAAGAGGTGACCGGCGC
CAACGTGCTGATCGCGATCTTCGCCGAGCGCGAGAGCCATGCCGCGTACTTCCTGCAGGAGCAGGACATGACGCGCTATG
ACGCCGTCAACTACATCAGCCACGGCATCGCCAAGCGGCCGGGCGTCTCCGAGGCGCGGCCGGTGCGCGGCGTCGACGAA
GAGACCGAGGCAAAGGGTACCGAGGACGCCAAGAAGAAGGGCGAAGCGCTCGAGACCTATTGCGTCAACCTCAACAAGAA
GGCGCGCGACGGCAAGATCGATCCGGTGATCGGACGCAATTCCGAGATCAACCGCGCGATCCAGGTGCTGTGCCGCCGGC
AGAAGAACAATCCGCTGTTCGTGGGCGAGGCCGGTGTCGGCAAGACCGCGATCGCGGAGGGCCTCGCCAAGCGCATCGTC
GACAGCGAGGTGCCGGAGGTTCTTGCGGCTGCGACCGTGTTCTCGCTCGACATGGGCACGCTGCTCGCGGGCACGCGCTA
TCGCGGCGACTTCGAAGAGCGCCTGAAGCAGGTGCTGAAGGAGCTCGAAGCGCATCCCAACGCCATCCTGTTCATCGACG
AGATCCACACCGTGATCGGTGCGGGCGCGACGTCGGGCGGGGCGATGGATGCCTCGAACCTGCTCAAGCCGGCGCTTGCC
TCGGGCACGATCCGCTGCATGGGCTCGACCACCTACAAGGAATACCGCCAGCACTTCGAGAAGGACCGCGCGCTGGTGCG
GCGCTTCCAGAAGATCGACATCAACGAGCCGACGGTGGAGGACGCGATCGCGATCCTCAAGGGTCTTAAGCCGTACTTCG
AGGACTACCATCGGCTGAAGTACACCAATGAGGCGATCGAGGCTGCGGTGCAGCTCTCCTCGCGCTACATCCACGACCGC
AAGCTGCCCGACAAGGCGATCGACGTGATCGACGAGTCCGGCGCGGCGCAGATGCTGGTGGCCGAGAACAAGCGCAAGAA
GACGATCGGCATCAAGGAGATCGAGACCACGATCGCCTCGATGGCGCGGATCCCGCCGAAGAGCGTGTCGAAGGACGATG
CCGAGGTGCTCAAGCATCTCGAGCAGACCCTGAAGCGCACCGTGTTCGGTCAGGACAAGGCGATCGAGTCGCTCGCCGCT
TCGATCAAGCTGGCGCGTGCCGGCCTGCGCGAGCCGGAGAAGCCGATCGGCTGCTATTTGTTCTCGGGTCCGACCGGCGT
CGGCAAGACCGAAGTCGCAAAGCAGCTCGCGGCGTCGCTCGGCGTCGAGCTGTTGCGCTTCGACATGTCCGAATACATGG
AGCGTCACACCGTGTCGCGCCTGATCGGCGCGCCTCCCGGCTATGTCGGCTTCGACCAGGGCGGCCTGCTCACCGACGGC
GTCGACCAGCATCCGCATTGCGTGGTTCTGCTCGACGAAATCGAGAAGGCGCATCCCGACCTCTACAACGTGCTGCTCCA
GATCATGGATCACGGCCGGCTCACCGACCATAACGGCAAGCAGGTCAACTTCCGCAACGTGATCCTGATCATGACCACGA
ATGCGGGTGCTTCGGATCTCGCCAAGCAGGCGTTCGGCTTCACCCGCTCGAAGCGGGAAGGCGACGACCACGAGGCGATC
AACCGGCAGTTCGCGCCGGAATTCCGCAACCGTCTCGATGCCATCGTCTCGTTCGGCCATCTCAGCGTCGAGGTGATCGG
TACGGTCGTGGAGAAGTTCGTGCTTCAGCTCGAGGCTCAGCTCGGCGATCGCGACGTCACCATCGAACTGTCCGAGCCCG
CCAAGACCTGGCTGGTCCAGCATGGTTACGACGAGCAGATGGGCGCACGGCCCATGGCCCGCGTCATCCAGGAGCACATC
AAGAAGCCGCTGGCTGACGAGGTGCTGTTCGGCAAGCTCAAGGGTGGCGGCCACGTCCGCGTCGTCCTGGTCAAGGACGA
GGCCGACGAGACCAAGGACAAGATCGGGTTCGAGTTCCTCGACGGTCCGATCACGCCGAAGCAGGAGAAGCTGCCCGGCG
CCCGCAAGCGTCCGCCGGGCAAGTCCAAGCCGGGCGGTGGTGGCTCCGGCGGCTCGAAGGGGCCGACCTCGAAGGGCCCG
CTGGTCAAGGCTTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-64)

• ATPase family associated with various cellular activities (AAA) (AAA) (219-331)

• AAA domain (Cdc48 subfamily) (AAA_2) (495-655)

• AAA lid domain (AAA_lid_9) (358-462)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (661-741)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	39.006	100	0.391
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	37.269	100	0.377
clpA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	40.267	93.284	0.376
clpC	Streptococcus pneumoniae D39	37.376	100	0.376
clpC	Streptococcus pneumoniae TIGR4	37.376	100	0.376
clpC	Streptococcus pneumoniae Rx1	37.376	100	0.376
clpC	Streptococcus thermophilus LMD-9	36.667	100	0.369
clpC	Streptococcus thermophilus LMG 18311	36.667	100	0.369