Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Bang102_RS01220 Genome accession   NZ_CP014241
Coordinates   305492..307333 (-) Length   613 a.a.
NCBI ID   WP_045920769.1    Uniprot ID   -
Organism   Bifidobacterium angulatum strain GT102     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 300492..312333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bang102_RS01205 (Bang102_001205) - 302329..303051 (+) 723 WP_045920767.1 hypothetical protein -
  Bang102_RS08750 - 303123..303320 (+) 198 WP_236704266.1 YesL family protein -
  Bang102_RS08755 - 303351..303743 (+) 393 WP_236704267.1 hypothetical protein -
  Bang102_RS01215 (Bang102_001215) - 304017..305030 (+) 1014 WP_045920768.1 ribose-phosphate diphosphokinase -
  Bang102_RS01220 (Bang102_001220) rcrQ 305492..307333 (-) 1842 WP_045920769.1 ABC transporter ATP-binding protein Regulator
  Bang102_RS01225 (Bang102_001225) rcrP 307347..309134 (-) 1788 WP_045920770.1 ABC transporter ATP-binding protein Regulator
  Bang102_RS01230 (Bang102_001230) - 309476..309982 (-) 507 WP_045920771.1 MarR family winged helix-turn-helix transcriptional regulator -
  Bang102_RS01235 (Bang102_001235) - 310068..311102 (-) 1035 WP_045920772.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67292.93 Da        Isoelectric Point: 6.5010

>NTDB_id=169718 Bang102_RS01220 WP_045920769.1 305492..307333(-) (rcrQ) [Bifidobacterium angulatum strain GT102]
MPRGMGRGRGPVEKPLNFGGAMKKLVRFCRRYIPVIVVSLILGAAGTICQIIGPDKLKDMTNEITKGLPAIVHGKPVMNS
IDMDAVSRIGWTLVALYVGYAVLCYVQSWLMANVTQRTAQQLREAISVKINKLPLKYFDNTSYGDVLSRITNDVDAIGQT
LGQSLGSLITSITLFFGALIMMFYNNVIMTLCAIGSALFGLIIMGLIMKVSQKYFAQQQIALGDVNGHVEEMYSGHTVVK
AYCGEEDSIARFEKYNNDLYVSGWKSQFLSGLMMPLMNFIGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLDEPELADESDKQALLGVGVDGKPQQVRGDVEFSHVRFGYDPGKTIINDFSASVKSG
QKIAVVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFHGTIRENIAYSKPGVTDEQI
INACKAVGLHHYIMSLPNGYDTVLDDKTSLSQGQKQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKSGFYADIYNSQFTLAQ

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=169718 Bang102_RS01220 WP_045920769.1 305492..307333(-) (rcrQ) [Bifidobacterium angulatum strain GT102]
ATGCCAAGAGGAATGGGACGTGGGCGTGGCCCCGTTGAAAAACCGCTGAATTTCGGCGGTGCGATGAAGAAGCTGGTACG
CTTCTGCCGCCGATATATTCCGGTGATCGTTGTTTCGCTGATTCTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGCC
CGGACAAGCTTAAAGACATGACCAACGAGATCACCAAGGGCCTGCCGGCCATCGTGCACGGCAAGCCGGTGATGAACTCG
ATCGATATGGACGCCGTCTCACGCATCGGCTGGACGCTCGTCGCACTATACGTGGGCTATGCGGTGCTGTGCTACGTGCA
AAGCTGGCTGATGGCGAACGTGACACAGCGCACCGCACAGCAGCTGCGCGAAGCGATCAGCGTGAAAATCAACAAGCTGC
CGCTCAAATACTTCGACAACACCAGCTACGGCGACGTGCTCAGCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTCGGCCAGTCGCTCGGCTCGCTCATCACCTCCATCACGCTGTTCTTCGGCGCGCTGATCATGATGTTCTACAACAACGT
GATCATGACGCTGTGCGCCATCGGCTCCGCGCTGTTCGGCCTGATCATCATGGGCCTGATCATGAAGGTCTCGCAGAAAT
ACTTCGCCCAGCAGCAGATCGCCCTGGGCGACGTGAACGGCCACGTGGAGGAGATGTACTCCGGCCACACCGTGGTCAAG
GCCTACTGCGGCGAAGAGGACTCCATCGCACGCTTCGAAAAATACAACAACGACCTGTACGTCTCCGGCTGGAAGAGCCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCATCGGCAACTTCGGCTACGTGGTCGTGTGCGTGGTGGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGCTG
TCGCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGTTGTGCGGCCGCCTCCGAGCGTGTGTTCGGCTTCCTCGACGAGCC
GGAACTGGCCGACGAATCCGACAAGCAGGCGCTGCTCGGCGTCGGTGTGGACGGCAAGCCGCAGCAGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGTTTCGGCTACGATCCGGGCAAGACCATCATCAACGACTTCTCCGCCTCCGTGAAATCCGGC
CAGAAGATCGCCGTCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTGAACCTGCTCATGCGTTTCTACGAGATCTC
CGGCGGTTCGATCTCGATCGATGGTGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACATGGGTGTTCCATGGAACAATACGTGAAAACATCGCGTACTCGAAGCCCGGCGTGACCGACGAGCAGATC
ATCAACGCCTGCAAGGCCGTGGGTCTGCACCATTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTGGACGACAA
GACCTCGCTATCGCAAGGCCAGAAGCAGCTGCTCACCATCGCCCGCGCCATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCGACCTCGTCGGTCGACACGCGTACCGAGGAGCTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGCCGTACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATTCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACCCATGAGGAGCTGCTCGCCAAGTCCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCGCAGT
AG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(78-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.839

96.085

0.527

Multiple sequence alignment