Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   Bang102_RS01225 Genome accession   NZ_CP014241
Coordinates   307347..309134 (-) Length   595 a.a.
NCBI ID   WP_045920770.1    Uniprot ID   -
Organism   Bifidobacterium angulatum strain GT102     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 302347..314134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bang102_RS08750 - 303123..303320 (+) 198 WP_236704266.1 YesL family protein -
  Bang102_RS08755 - 303351..303743 (+) 393 WP_236704267.1 hypothetical protein -
  Bang102_RS01215 (Bang102_001215) - 304017..305030 (+) 1014 WP_045920768.1 ribose-phosphate diphosphokinase -
  Bang102_RS01220 (Bang102_001220) rcrQ 305492..307333 (-) 1842 WP_045920769.1 ABC transporter ATP-binding protein Regulator
  Bang102_RS01225 (Bang102_001225) rcrP 307347..309134 (-) 1788 WP_045920770.1 ABC transporter ATP-binding protein Regulator
  Bang102_RS01230 (Bang102_001230) - 309476..309982 (-) 507 WP_045920771.1 MarR family winged helix-turn-helix transcriptional regulator -
  Bang102_RS01235 (Bang102_001235) - 310068..311102 (-) 1035 WP_045920772.1 aldo/keto reductase -
  Bang102_RS01240 (Bang102_001240) - 311180..312412 (-) 1233 WP_045920773.1 type II toxin-antitoxin system HipA family toxin -
  Bang102_RS01245 (Bang102_001245) - 312417..312710 (-) 294 WP_045920774.1 helix-turn-helix domain-containing protein -
  Bang102_RS01250 (Bang102_001250) thiS 313139..313333 (+) 195 WP_003825038.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65518.89 Da        Isoelectric Point: 6.6536

>NTDB_id=169719 Bang102_RS01225 WP_045920770.1 307347..309134(-) (rcrP) [Bifidobacterium angulatum strain GT102]
MLRIMRYLSKAEIGQMLIALVSIVGQIWLDLTLPDYMSDITTLVETPGSTMHDIWVAGGKMLLVSLGSVACAIVTGYIAA
RVGASFSQRLRSLEFNKVESFGPAEMSRFSTASLITRSTNDITQIQMFITMGLMMIVKSPIMAVWAICKIAGKGFEWTVA
TGIAVVVLMAAICVIMFFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKELTDTQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAVDLTDKLTTFANMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVIDTK
PLITDGTHIEGEPGKQGEIEFRNVSFTYPDSRKAMLEGISFTAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGQVLVD
GVDVRDYTLKALRDKIGYVPQQSFLFKGTIASNVSYGDKSGSKSGSEEAGTDADMANVRKACEVAQATEFVEKKDNTYES
SIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAKEAKDSTKLIVAQRIGTIMNADRIVVLD
QGKVVGQGTHEELLDNCDVYRQIAQSQLSEDELKH

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=169719 Bang102_RS01225 WP_045920770.1 307347..309134(-) (rcrP) [Bifidobacterium angulatum strain GT102]
ATGCTTCGCATCATGCGATACCTCTCCAAAGCGGAGATAGGCCAGATGCTCATAGCACTGGTCAGCATCGTAGGGCAGAT
CTGGCTCGATCTGACCCTGCCGGACTACATGTCCGACATCACCACACTCGTGGAAACCCCCGGCAGCACAATGCACGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCCGTCGCCTGCGCCATCGTCACCGGCTATATCGCCGCA
CGCGTGGGCGCCTCATTCAGCCAGCGACTGCGCTCGCTCGAATTCAACAAGGTGGAAAGCTTCGGCCCGGCCGAAATGAG
CAGATTCTCCACCGCATCGCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAATCGCCGATCATGGCCGTATGGGCCATCTGCAAGATCGCCGGCAAAGGCTTTGAGTGGACGGTCGCC
ACCGGCATCGCCGTCGTGGTATTGATGGCCGCCATCTGCGTGATCATGTTCTTCGTCATGCCGAAGTTCAAAGCCATGCA
GCGCCTGACCGACAACATCAACCTGGTGGCACGCGAAAACCTGACCGGTCTGCGCGTGGTACGCGCCTACAACGCCGAAG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGAACTCACCGACACCCAGCTGTTCACCAACCGTGCCATGGCCATC
ATGATGCCGCTGATGAACACCATCATGAACGGACTCATGCTGGCCGTCTACTGGATCGGCGCCTACCTCATCGACGCGGT
CGACCTGACCGACAAGCTCACCACCTTCGCCAACATGGTCGTGTTCTCCAGCTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTATTCGTACTCTGGCCGCGCGCCGACGTGTCCGCACAGCGCGTGCTGGAAGTAATCGACACCAAA
CCGCTCATCACCGACGGCACACACATCGAAGGCGAACCCGGCAAGCAGGGCGAAATCGAATTCCGCAACGTAAGCTTCAC
CTACCCGGATTCGCGTAAGGCCATGCTCGAAGGCATCAGCTTCACCGCCAAGAAAGGCCAGACCGTGGCATTCATCGGCT
CCACCGGTTCCGGCAAATCCTCACTCATCAACCTGGTGCCGCGCTTCTACGACGCCACACAAGGCCAGGTGCTGGTCGAC
GGCGTGGACGTGCGCGACTACACGCTCAAAGCCCTGCGCGACAAGATCGGCTACGTACCGCAGCAGTCGTTCCTGTTCAA
AGGCACCATCGCCTCCAACGTGAGCTACGGCGACAAGTCGGGCAGCAAGTCGGGCAGCGAGGAAGCCGGCACGGATGCCG
ATATGGCCAACGTGCGCAAGGCATGCGAAGTGGCCCAGGCCACCGAATTCGTAGAAAAGAAAGACAACACCTACGAATCC
TCCATCGCACAAGGCGGCTCCAACGTATCCGGCGGGCAGAAGCAGCGCCTGTCGATCGCCCGCGCCGTCTACCGCCACCC
GGAGATCCTGATCTTCGACGACTCCTTCTCCGCGCTCGACTTCAAAACCGACCGTGCGGTACGCGACGCGCTCGCCAAGG
AAGCGAAGGACTCCACCAAACTCATCGTCGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTACTCGAC
CAAGGCAAGGTGGTCGGTCAAGGCACGCATGAGGAACTGCTTGACAACTGCGACGTATACCGCCAGATCGCGCAATCGCA
GCTCAGCGAAGACGAATTGAAGCACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.247

100

0.513

Multiple sequence alignment