Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BJD94_RS11455 Genome accession   NZ_CP017635
Coordinates   2249784..2250458 (-) Length   224 a.a.
NCBI ID   WP_072599844.1    Uniprot ID   -
Organism   Vibrio vulnificus Env1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244784..2255458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD94_RS11430 (BJD94_10200) - 2245328..2247304 (-) 1977 WP_038964811.1 LTA synthase family protein -
  BJD94_RS11435 (BJD94_10205) mutM 2247452..2248261 (-) 810 WP_072599845.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  BJD94_RS11440 (BJD94_10210) - 2248291..2248788 (-) 498 WP_017420464.1 hypothetical protein -
  BJD94_RS11445 (BJD94_10215) rpmG 2249050..2249220 (-) 171 WP_011078893.1 50S ribosomal protein L33 -
  BJD94_RS11450 (BJD94_10220) rpmB 2249236..2249472 (-) 237 WP_011078894.1 50S ribosomal protein L28 -
  BJD94_RS11455 (BJD94_10225) radC 2249784..2250458 (-) 675 WP_072599844.1 DNA repair protein RadC Machinery gene
  BJD94_RS11460 (BJD94_10230) - 2250572..2252239 (-) 1668 WP_039541036.1 methyl-accepting chemotaxis protein -
  BJD94_RS11465 (BJD94_10235) coaBC 2252523..2253728 (+) 1206 WP_026050276.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  BJD94_RS11470 (BJD94_10240) slmA 2253879..2254469 (+) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  BJD94_RS11475 (BJD94_10245) - 2254473..2255411 (+) 939 WP_017420468.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25321.96 Da        Isoelectric Point: 6.9203

>NTDB_id=169657 BJD94_RS11455 WP_072599844.1 2249784..2250458(-) (radC) [Vibrio vulnificus Env1]
MSLKNLPSESMPREKLLQHGPESLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALHYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=169657 BJD94_RS11455 WP_072599844.1 2249784..2250458(-) (radC) [Vibrio vulnificus Env1]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGAGAAAAGTTGCTTCAGCATGGGCCTGAGTCTTTGTCCGATGC
CGAGTTACTCGCCATCTTTTTAAGAACAGGCACACAAGGAATGAACGTGATTGAACTTGCCGATTTTTTATTGCGAGACT
TTGGTTCGCTGAGAAAACTGTTTTCTGCCGATGAACAGAGCTTTTGTCGTCACAAAGGATTGGGGCAGGCAAAATACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACATTGCAACGTGGTGATGCGCTCACCAGTCCACA
GCATACTAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTGTTGTTCCTCGATAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTCGTTAAAAGA
GCCTTACACTATAATGCCGCCGCTTTAATACTGGCACACAACCATCCCTCAGGCGTAGCGGAGCCAAGCCAAGCAGATCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTTGTCGGCGATGGAG
AGGTAGTGTCATTCGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(4-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.241

96.429

0.513
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379