Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VN23_RS17290 Genome accession   NZ_CP014222
Coordinates   3838221..3838604 (-) Length   127 a.a.
NCBI ID   WP_046353686.1    Uniprot ID   -
Organism   Janthinobacterium sp. B9-8     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3833221..3843604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN23_RS17275 (VN23_17275) - 3834677..3836848 (-) 2172 WP_046353683.1 methyl-accepting chemotaxis protein -
  VN23_RS17280 (VN23_17280) - 3837048..3837563 (-) 516 WP_046353684.1 chemotaxis protein CheW -
  VN23_RS17285 (VN23_17285) - 3837841..3838203 (-) 363 WP_046353685.1 response regulator -
  VN23_RS17290 (VN23_17290) pilG 3838221..3838604 (-) 384 WP_046353686.1 response regulator Regulator
  VN23_RS17295 (VN23_17295) yihA 3838918..3839571 (-) 654 WP_046353687.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  VN23_RS17300 (VN23_17300) - 3839810..3840433 (+) 624 WP_231743290.1 c-type cytochrome -
  VN23_RS17305 (VN23_17305) - 3840593..3842605 (+) 2013 WP_046353689.1 cytochrome c biogenesis protein ResB -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14040.34 Da        Isoelectric Point: 7.8213

>NTDB_id=169555 VN23_RS17290 WP_046353686.1 3838221..3838604(-) (pilG) [Janthinobacterium sp. B9-8]
MSQLAGVKVMVIDDSNTIRRSAEIFLGQAGCEVILAEDGFDALAKISDRLPDVIFVDVMMPRLDGYQTCSLIKKNPRYKT
TPVIMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLQAVAAHIRSV

Nucleotide


Download         Length: 384 bp        

>NTDB_id=169555 VN23_RS17290 WP_046353686.1 3838221..3838604(-) (pilG) [Janthinobacterium sp. B9-8]
ATGTCACAGCTCGCCGGGGTAAAAGTCATGGTGATTGATGACAGCAATACCATACGCAGAAGTGCGGAGATTTTTTTGGG
GCAGGCTGGCTGCGAGGTGATTCTTGCAGAAGACGGTTTTGATGCATTAGCTAAAATCAGCGATCGTTTACCCGATGTGA
TTTTTGTTGATGTAATGATGCCAAGGCTTGATGGCTATCAAACCTGCTCGCTGATTAAAAAAAATCCTCGATATAAAACG
ACCCCCGTTATTATGCTGTCCTCTAAAGATGGTTTATTTGATCGTGCCAGAGGCAGGATGGTTGGGTCTGATGAGTATTT
AACTAAGCCTTTTACTAAAGACAGCCTATTGCAGGCTGTTGCTGCGCATATTCGCAGCGTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

67.769

95.276

0.646
  vicR Streptococcus mutans UA159

39.831

92.913

0.37

Multiple sequence alignment