Detailed information NTG0169491

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: AXA63_RS16105
• Genome accession: NZ_CP014215
• Coordinates: 3324203..3324838 (+)
• Length: 211 a.a.
• NCBI ID: WP_000472273.1
• Uniprot ID: A0A9P3CZD1
• Organism: Acinetobacter baumannii strain YU-R612
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3325624..3326714	3324203..3324838	flank	786

Gene organization within MGE regions

Location: 3324203..3326714

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXA63_RS16105 (AXA63_16105)	comF	3324203..3324838 (+)	636	WP_000472273.1	ComF family protein	Machinery gene
AXA63_RS16110 (AXA63_16110)	-	3324841..3325242 (-)	402	WP_000849701.1	NUDIX domain-containing protein	-
AXA63_RS16115 (AXA63_16115)	-	3325257..3325604 (-)	348	Protein_3176	TIGR00730 family Rossman fold protein	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 24565.69 Da
• Isoelectric Point: 9.7140

>NTDB_id=169491 AXA63_RS16105 WP_000472273.1 3324203..3324838(+) (comF) [Acinetobacter baumannii strain YU-R612]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide

• Length: 636 bp

>NTDB_id=169491 AXA63_RS16105 WP_000472273.1 3324203..3324838(+) (comF) [Acinetobacter baumannii strain YU-R612]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATACTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTTGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (114-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baumannii strain A118	100	100	1
comF	Acinetobacter baumannii D1279779	99.052	100	0.991