Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   BJK08_RS06220 Genome accession   NZ_CP017602
Coordinates   1362161..1362760 (+) Length   199 a.a.
NCBI ID   WP_027226815.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1357161..1367760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJK08_RS06195 (BJK08_06085) - 1357507..1358247 (+) 741 WP_032830130.1 peptidoglycan DD-metalloendopeptidase family protein -
  BJK08_RS06200 (BJK08_06090) rpoS 1358333..1359358 (+) 1026 WP_027226811.1 RNA polymerase sigma factor RpoS Regulator
  BJK08_RS06205 (BJK08_06095) hmgA 1359501..1360751 (-) 1251 WP_027226812.1 homogentisate 1,2-dioxygenase -
  BJK08_RS06210 (BJK08_06100) - 1360897..1361640 (+) 744 WP_027226813.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BJK08_RS06215 (BJK08_06105) ruvC 1361640..1362164 (+) 525 WP_027226814.1 crossover junction endodeoxyribonuclease RuvC -
  BJK08_RS06220 (BJK08_06110) ruvA 1362161..1362760 (+) 600 WP_027226815.1 Holliday junction branch migration protein RuvA Machinery gene
  BJK08_RS06225 (BJK08_06115) - 1362819..1363139 (+) 321 WP_027226816.1 hypothetical protein -
  BJK08_RS06230 (BJK08_06120) lem8 1363217..1364776 (-) 1560 WP_027226817.1 Dot/Icm T4SS effector Lem8 -
  BJK08_RS06235 (BJK08_06125) - 1365065..1366480 (-) 1416 WP_027226818.1 ATP-binding protein -
  BJK08_RS06240 (BJK08_06130) ciaR 1366477..1367154 (-) 678 WP_011213604.1 response regulator Regulator
  BJK08_RS06245 (BJK08_06135) - 1367215..1367760 (-) 546 WP_027221489.1 septation protein A -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22074.29 Da        Isoelectric Point: 6.4932

>NTDB_id=169487 BJK08_RS06220 WP_027226815.1 1362161..1362760(+) (ruvA) [Legionella pneumophila strain D5945]
MIGWLHGQIVDRHQPGKLVLDVNGVGYDVETSLNTFFQIENDNQSVGLHIHTIVREDALLLYGFLDKEERSLFRALIKVN
GVGPKLAMAILSSISPKEFIQCIHQENAALLTKLPGIGKKTAERLVIEMRDSIKQFDGSVSDTLQKQAGSAHSQEEAISA
LEALGYKPQEAWKVVNKIDNGNKSCEQLIREALQILSSR

Nucleotide


Download         Length: 600 bp        

>NTDB_id=169487 BJK08_RS06220 WP_027226815.1 1362161..1362760(+) (ruvA) [Legionella pneumophila strain D5945]
ATGATAGGTTGGCTCCATGGTCAAATTGTAGATAGGCATCAGCCAGGAAAATTGGTTCTTGATGTCAATGGAGTGGGGTA
TGATGTAGAAACCTCTTTGAATACTTTTTTTCAGATAGAAAATGATAATCAATCGGTTGGATTACATATTCACACGATAG
TTCGAGAAGATGCCTTGTTATTGTATGGCTTCCTGGATAAAGAGGAGCGTTCTTTATTCAGAGCATTAATTAAAGTGAAT
GGGGTAGGCCCCAAACTGGCTATGGCTATTTTATCCAGTATTTCTCCTAAGGAATTTATTCAGTGCATTCACCAGGAAAA
CGCTGCTTTGTTAACCAAGCTACCTGGTATAGGTAAGAAAACTGCAGAACGATTAGTAATCGAGATGAGAGACAGTATAA
AGCAATTTGATGGTTCGGTTTCTGATACTCTCCAAAAACAGGCAGGTAGTGCTCATAGTCAAGAAGAAGCGATTAGCGCG
TTGGAAGCATTAGGTTATAAGCCACAAGAGGCTTGGAAAGTTGTGAATAAAATTGATAATGGTAATAAGAGTTGTGAGCA
GTTGATTCGTGAGGCTTTGCAAATTCTTTCTTCGCGATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(73-131)

RuvA N terminal domain (RuvA_N)

(1-63)

RuvA, C-terminal domain (RuvA_C)

(154-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.784

100

0.367

Multiple sequence alignment