Detailed information NTG0169486

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BJK08_RS06200
• Genome accession: NZ_CP017602
• Coordinates: 1358333..1359358 (+)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain D5945
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1353333..1364358

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BJK08_RS06170 (BJK08_06060)	-	1353764..1354081 (+)	318	WP_027226805.1	DUF2845 domain-containing protein	-
BJK08_RS06175 (BJK08_06065)	-	1354117..1354488 (+)	372	WP_027226806.1	protease inhibitor I42 family protein	-
BJK08_RS06180 (BJK08_06070)	-	1354543..1356261 (-)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
BJK08_RS06185 (BJK08_06075)	-	1356341..1356724 (+)	384	WP_027226808.1	hypothetical protein	-
BJK08_RS06190 (BJK08_06080)	surE	1356727..1357485 (+)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
BJK08_RS06195 (BJK08_06085)	-	1357507..1358247 (+)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
BJK08_RS06200 (BJK08_06090)	rpoS	1358333..1359358 (+)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
BJK08_RS06205 (BJK08_06095)	hmgA	1359501..1360751 (-)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
BJK08_RS06210 (BJK08_06100)	-	1360897..1361640 (+)	744	WP_027226813.1	YebC/PmpR family DNA-binding transcriptional regulator	-
BJK08_RS06215 (BJK08_06105)	ruvC	1361640..1362164 (+)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
BJK08_RS06220 (BJK08_06110)	ruvA	1362161..1362760 (+)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
BJK08_RS06225 (BJK08_06115)	-	1362819..1363139 (+)	321	WP_027226816.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=169486 BJK08_RS06200 WP_027226811.1 1358333..1359358(+) (rpoS) [Legionella pneumophila strain D5945]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=169486 BJK08_RS06200 WP_027226811.1 1358333..1359358(+) (rpoS) [Legionella pneumophila strain D5945]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548