Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   A4W85_RS07440 Genome accession   NZ_CP017570
Coordinates   1458928..1459602 (+) Length   224 a.a.
NCBI ID   WP_011375146.1    Uniprot ID   Q38VM7
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453928..1464602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS07420 (A4W85_07375) - 1454262..1455002 (-) 741 WP_142500954.1 MBL fold metallo-hydrolase -
  A4W85_RS07425 (A4W85_07380) - 1455132..1455917 (-) 786 WP_016265492.1 DUF975 family protein -
  A4W85_RS07430 (A4W85_07385) - 1455935..1458034 (-) 2100 WP_056948108.1 ABC transporter permease -
  A4W85_RS07435 (A4W85_07390) - 1458012..1458788 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  A4W85_RS07440 (A4W85_07395) braR 1458928..1459602 (+) 675 WP_011375146.1 response regulator transcription factor Regulator
  A4W85_RS07445 (A4W85_07400) - 1459612..1460679 (+) 1068 WP_251944720.1 HAMP domain-containing histidine kinase -
  A4W85_RS07450 (A4W85_07405) - 1460789..1461955 (+) 1167 WP_056948105.1 hypothetical protein -
  A4W85_RS07455 (A4W85_07410) - 1461989..1463284 (-) 1296 WP_011375149.1 PTS sugar transporter subunit IIC -
  A4W85_RS07460 (A4W85_07415) nrdG 1463531..1464112 (-) 582 WP_011375150.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25960.96 Da        Isoelectric Point: 4.7301

>NTDB_id=169385 A4W85_RS07440 WP_011375146.1 1458928..1459602(+) (braR) [Latilactobacillus sakei strain TMW 1.578]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=169385 A4W85_RS07440 WP_011375146.1 1458928..1459602(+) (braR) [Latilactobacillus sakei strain TMW 1.578]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAAAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCCCGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTTTCTAAAGTGCCAATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGCGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGTCAACACGGGCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATTCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38VM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362