Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A4W85_RS06550 Genome accession   NZ_CP017570
Coordinates   1289081..1289695 (+) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain TMW 1.578     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1284081..1294695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W85_RS06530 (A4W85_06490) - 1284714..1286504 (-) 1791 WP_096584675.1 ABC transporter ATP-binding protein -
  A4W85_RS06535 (A4W85_06495) - 1286509..1288251 (-) 1743 Protein_1258 ABC transporter ATP-binding protein -
  A4W85_RS06540 (A4W85_06500) - 1288393..1288623 (-) 231 WP_011374970.1 YneF family protein -
  A4W85_RS06545 (A4W85_06505) - 1288704..1288946 (-) 243 WP_016265356.1 DUF896 domain-containing protein -
  A4W85_RS06550 (A4W85_06510) dinR/lexA 1289081..1289695 (+) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  A4W85_RS06555 (A4W85_06515) - 1289829..1290347 (-) 519 WP_011374973.1 adenine phosphoribosyltransferase -
  A4W85_RS06560 (A4W85_06520) recJ 1290371..1292683 (-) 2313 WP_025016402.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  A4W85_RS06565 (A4W85_06525) galE 1292828..1293819 (+) 992 Protein_1264 UDP-glucose 4-epimerase GalE -
  A4W85_RS06570 (A4W85_06530) - 1293905..1294270 (+) 366 WP_112217745.1 DUF1304 domain-containing protein -
  A4W85_RS06575 (A4W85_06535) - 1294287..1294613 (+) 327 WP_016265359.1 heavy metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=169374 A4W85_RS06550 WP_011374972.1 1289081..1289695(+) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.578]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=169374 A4W85_RS06550 WP_011374972.1 1289081..1289695(+) (dinR/lexA) [Latilactobacillus sakei strain TMW 1.578]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTACCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAACCACGGGCAATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCAACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACCGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAATGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGAAAGGTCGTTGGCCTTTACCGAGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593