Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AWJ15_RS11315 Genome accession   NZ_CP014201
Coordinates   2219564..2220160 (+) Length   198 a.a.
NCBI ID   WP_077069726.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain BFE5264     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2214564..2225160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWJ15_RS11295 (AWJ15_10405) gyrA 2215184..2217796 (+) 2613 WP_077069723.1 DNA gyrase subunit A -
  AWJ15_RS11300 (AWJ15_10410) deoC 2217869..2218573 (-) 705 WP_077069724.1 deoxyribose-phosphate aldolase -
  AWJ15_RS11305 (AWJ15_10415) ssb 2218683..2219111 (+) 429 WP_077069725.1 single-stranded DNA-binding protein -
  AWJ15_RS11310 (AWJ15_10420) rpsF 2219238..2219534 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  AWJ15_RS11315 (AWJ15_10425) ssb 2219564..2220160 (+) 597 WP_077069726.1 single-stranded DNA-binding protein Machinery gene
  AWJ15_RS11320 (AWJ15_10430) rpsR 2220251..2220487 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  AWJ15_RS11330 (AWJ15_10435) - 2220674..2221180 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  AWJ15_RS11335 (AWJ15_10440) - 2221491..2222969 (+) 1479 WP_077069727.1 cytochrome ubiquinol oxidase subunit I -
  AWJ15_RS11340 (AWJ15_10445) cydB 2222962..2223981 (+) 1020 WP_077069728.1 cytochrome d ubiquinol oxidase subunit II -
  AWJ15_RS11345 (AWJ15_10450) - 2224021..2224215 (+) 195 WP_005707490.1 hypothetical protein -
  AWJ15_RS16875 - 2224294..2224551 (-) 258 WP_015764802.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21174.89 Da        Isoelectric Point: 4.9056

>NTDB_id=169346 AWJ15_RS11315 WP_077069726.1 2219564..2220160(+) (ssb) [Lacticaseibacillus rhamnosus strain BFE5264]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NQNPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=169346 AWJ15_RS11315 WP_077069726.1 2219564..2220160(+) (ssb) [Lacticaseibacillus rhamnosus strain BFE5264]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACGCGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AATCAAAACCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAA
ACCGATCGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.596

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.746

100

0.515

Multiple sequence alignment