Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A4W84_RS06940 Genome accession   NZ_CP017568
Coordinates   1360522..1361154 (-) Length   210 a.a.
NCBI ID   WP_016265428.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.417     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1355522..1366154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W84_RS06910 (A4W84_06805) - 1355753..1356844 (-) 1092 WP_011375058.1 ABC transporter ATP-binding protein -
  A4W84_RS06915 (A4W84_06810) - 1357000..1357995 (+) 996 WP_056947225.1 YhdH/YhfP family quinone oxidoreductase -
  A4W84_RS06920 (A4W84_06815) - 1358050..1358268 (-) 219 WP_056947228.1 CsbD family protein -
  A4W84_RS06925 (A4W84_06820) - 1358343..1359008 (-) 666 WP_056947232.1 ABC transporter ATP-binding protein -
  A4W84_RS06930 (A4W84_06825) - 1359010..1360068 (-) 1059 WP_056947235.1 ABC transporter permease -
  A4W84_RS06935 (A4W84_06830) - 1360203..1360496 (-) 294 WP_056947238.1 HesB/YadR/YfhF family protein -
  A4W84_RS06940 (A4W84_06835) vraR 1360522..1361154 (-) 633 WP_016265428.1 response regulator Regulator
  A4W84_RS06945 (A4W84_06840) - 1361156..1362220 (-) 1065 WP_056947241.1 sensor histidine kinase -
  A4W84_RS06950 (A4W84_06845) liaF 1362217..1362975 (-) 759 WP_016265430.1 cell wall-active antibiotics response protein LiaF -
  A4W84_RS06955 (A4W84_06850) greA 1363332..1363805 (-) 474 WP_011375067.1 transcription elongation factor GreA -
  A4W84_RS06960 (A4W84_06855) udk 1363827..1364501 (-) 675 WP_226474417.1 uridine kinase -
  A4W84_RS06965 (A4W84_06860) mltG 1364541..1365692 (-) 1152 WP_016265432.1 endolytic transglycosylase MltG -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23359.95 Da        Isoelectric Point: 4.7642

>NTDB_id=169302 A4W84_RS06940 WP_016265428.1 1360522..1361154(-) (vraR) [Latilactobacillus sakei strain TMW 1.417]
MIKVLIVDDHEMVRLGISTYLGVQDDLEVVDQAVNGREGVEKALALRPDAILMDLVMPEMDGIEATKTILKAWPQAKIII
LTSFIDDEKVYPAIEAGAASYILKTSTAEEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNREREVLGLI
AKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQLAD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=169302 A4W84_RS06940 WP_016265428.1 1360522..1361154(-) (vraR) [Latilactobacillus sakei strain TMW 1.417]
GTGATAAAAGTATTGATTGTAGATGACCACGAGATGGTTCGATTGGGGATTTCAACTTATTTAGGGGTGCAAGACGATTT
AGAAGTGGTCGATCAAGCGGTTAATGGTCGCGAAGGTGTCGAAAAGGCATTGGCACTACGGCCAGATGCGATTTTAATGG
ATCTCGTTATGCCAGAAATGGATGGGATTGAAGCCACTAAGACGATTCTAAAGGCTTGGCCTCAAGCCAAGATTATTATT
CTAACCAGCTTTATTGATGATGAAAAAGTCTACCCAGCAATCGAAGCTGGTGCAGCAAGTTACATATTAAAAACGTCGAC
GGCTGAAGAGATTGCCAACACGATTCGGAAGACAACTGCGGGGCAATCAGTTTTAGAACCTGAAGTCACTAATAAGATGA
TGAATCGTATGACGCACCAGGCAGAAACAAAGTTATACGAAGATTTAACGAACCGTGAACGAGAAGTTCTAGGCTTGATT
GCCAAGGGCCGCAGTAATCAAGAAATTGCGGATGAATTATTCATCACGCTTAAAACGGTTAAGACGCATGTTTCCAATAT
TTTAGCGAAGTTACAAGTTGACGATCGGACGCAGGCCGCAATTTATGCCATCAAGCACCAATTAGCGGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

62.319

98.571

0.614
  degU Bacillus subtilis subsp. subtilis str. 168

36.53

100

0.381